Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU19_RS19540 Genome accession   NZ_CP155928
Coordinates   4529521..4531041 (+) Length   506 a.a.
NCBI ID   WP_116670835.1    Uniprot ID   -
Organism   Xanthomonas campestris strain CFBP 13427     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4524521..4536041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU19_RS19515 (ABFU19_19485) speE 4525478..4526335 (+) 858 WP_119961110.1 polyamine aminopropyltransferase -
  ABFU19_RS19520 (ABFU19_19490) - 4526450..4527235 (-) 786 WP_119961109.1 outer membrane beta-barrel protein -
  ABFU19_RS19525 (ABFU19_19495) - 4527763..4528422 (+) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  ABFU19_RS19530 (ABFU19_19500) - 4528704..4529042 (-) 339 WP_042595602.1 P-II family nitrogen regulator -
  ABFU19_RS19535 (ABFU19_19505) ubiK 4529233..4529505 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU19_RS19540 (ABFU19_19510) comM 4529521..4531041 (+) 1521 WP_116670835.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU19_RS19545 (ABFU19_19515) - 4531383..4531892 (+) 510 WP_014506278.1 lipocalin family protein -
  ABFU19_RS19550 (ABFU19_19520) - 4531903..4532079 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU19_RS19555 (ABFU19_19525) - 4532461..4534020 (+) 1560 WP_119961108.1 EAL domain-containing protein -
  ABFU19_RS19560 (ABFU19_19530) - 4534442..4534612 (-) 171 WP_183112002.1 hypothetical protein -
  ABFU19_RS19565 (ABFU19_19535) - 4534626..4535747 (-) 1122 WP_119961107.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53855.54 Da        Isoelectric Point: 8.3405

>NTDB_id=999785 ABFU19_RS19540 WP_116670835.1 4529521..4531041(+) (comM) [Xanthomonas campestris strain CFBP 13427]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=999785 ABFU19_RS19540 WP_116670835.1 4529521..4531041(+) (comM) [Xanthomonas campestris strain CFBP 13427]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTTCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCCTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
GTTACCCGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGCGCCCTGGAGATCGCAGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCACCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGACAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGTGTGGTCACCATCTCGCGGGCCGCGCGTAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCGATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACTCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

53.094

99.012

0.526
  comM Legionella pneumophila strain ERS1305867

53.094

99.012

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462

Multiple sequence alignment