Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFK28_RS22775 Genome accession   NZ_CP155692
Coordinates   4680973..4682493 (+) Length   506 a.a.
NCBI ID   WP_129345650.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain L3897     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4675973..4687493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFK28_RS22750 (ABFK28_22750) ilvE 4677540..4678469 (-) 930 WP_172514130.1 branched-chain-amino-acid transaminase -
  ABFK28_RS22755 (ABFK28_22755) ilvM 4678488..4678751 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ABFK28_RS22760 (ABFK28_22760) ilvG 4678748..4680394 (-) 1647 WP_021242826.1 acetolactate synthase 2 catalytic subunit -
  ABFK28_RS22765 (ABFK28_22765) ilvX 4680397..4680447 (-) 51 WP_192930497.1 peptide IlvX -
  ABFK28_RS22770 (ABFK28_22770) ilvL 4680534..4680632 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ABFK28_RS22775 (ABFK28_22775) comM 4680973..4682493 (+) 1521 WP_129345650.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFK28_RS22780 (ABFK28_22780) - 4682524..4682862 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  ABFK28_RS22785 (ABFK28_22785) hdfR 4682981..4683802 (+) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54790.75 Da        Isoelectric Point: 7.3354

>NTDB_id=998512 ABFK28_RS22775 WP_129345650.1 4680973..4682493(+) (comM) [Enterobacter roggenkampii strain L3897]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRGRVIAAQARQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=998512 ABFK28_RS22775 WP_129345650.1 4680973..4682493(+) (comM) [Enterobacter roggenkampii strain L3897]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGCTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTTATCGCCGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTATAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGTTCGGCATCGTTGCATAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATTTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGACGCACTGAGAGAACCTATTGAATCT
GGTGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAACCCCAG
CCCCACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGGGCGGGTGATCGCTGCCCAGGCACGACAATACGCCCGTCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAATAGTGAAGATGCAGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTACCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.25

99.407

0.579
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439

Multiple sequence alignment