Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABFK28_RS01550 Genome accession   NZ_CP155692
Coordinates   339112..339636 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain L3897     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 334112..344636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFK28_RS01530 (ABFK28_01530) aphA 334435..335148 (+) 714 WP_172514017.1 acid phosphatase AphA -
  ABFK28_RS01535 (ABFK28_01535) - 335262..335678 (+) 417 WP_023293516.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABFK28_RS01540 (ABFK28_01540) - 335681..336034 (+) 354 WP_049121142.1 MmcQ/YjbR family DNA-binding protein -
  ABFK28_RS01545 (ABFK28_01545) uvrA 336038..338860 (-) 2823 WP_008503383.1 excinuclease ABC subunit UvrA -
  ABFK28_RS01550 (ABFK28_01550) ssb 339112..339636 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABFK28_RS01555 (ABFK28_01555) - 339698..339979 (-) 282 WP_172514016.1 YjcB family protein -
  ABFK28_RS01560 (ABFK28_01560) - 340614..342179 (+) 1566 WP_023293514.1 EAL domain-containing protein -
  ABFK28_RS01565 (ABFK28_01565) soxS 342186..342512 (-) 327 WP_347004063.1 superoxide response transcriptional regulator SoxS -
  ABFK28_RS01570 (ABFK28_01570) soxR 342611..343069 (+) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  ABFK28_RS01575 (ABFK28_01575) - 343432..344103 (+) 672 WP_347004064.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=998496 ABFK28_RS01550 WP_008503384.1 339112..339636(+) (ssb) [Enterobacter roggenkampii strain L3897]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=998496 ABFK28_RS01550 WP_008503384.1 339112..339636(+) (ssb) [Enterobacter roggenkampii strain L3897]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368

Multiple sequence alignment