Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABDZ23_RS13800 Genome accession   NZ_CP155621
Coordinates   3037536..3039029 (+) Length   497 a.a.
NCBI ID   WP_097089516.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3032536..3044029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS13770 (ABDZ23_13770) - 3032899..3034236 (-) 1338 WP_027610437.1 ammonium transporter -
  ABDZ23_RS13775 (ABDZ23_13775) glnK 3034273..3034611 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABDZ23_RS13780 (ABDZ23_13780) - 3035025..3035285 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  ABDZ23_RS13785 (ABDZ23_13785) - 3035646..3036173 (+) 528 WP_247267217.1 Bro-N domain-containing protein -
  ABDZ23_RS13790 (ABDZ23_13790) - 3036168..3036458 (-) 291 WP_247267216.1 HigA family addiction module antitoxin -
  ABDZ23_RS13795 (ABDZ23_13795) - 3036689..3037153 (+) 465 WP_073470953.1 hypothetical protein -
  ABDZ23_RS13800 (ABDZ23_13800) comM 3037536..3039029 (+) 1494 WP_097089516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABDZ23_RS13805 (ABDZ23_13805) - 3039026..3040240 (-) 1215 WP_247267215.1 aldose 1-epimerase family protein -
  ABDZ23_RS13810 (ABDZ23_13810) - 3040460..3042436 (-) 1977 WP_247267214.1 methyl-accepting chemotaxis protein -
  ABDZ23_RS13815 (ABDZ23_13815) - 3042618..3043538 (-) 921 WP_247267213.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52994.20 Da        Isoelectric Point: 8.0086

>NTDB_id=998095 ABDZ23_RS13800 WP_097089516.1 3037536..3039029(+) (comM) [Pseudomonas koreensis strain BM06]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAAAVVAEARERQQKRQRCANAFLDLPGLKRHCQLSTADEKWLESACERLTLSLRSAHRLLKVARTLADLEQVDA
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=998095 ABDZ23_RS13800 WP_097089516.1 3037536..3039029(+) (comM) [Pseudomonas koreensis strain BM06]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATAGGCGTGGATGCTCCCGCCGTCACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGTCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGACTTGCCCAAGGATGGCGGGCGC
TTTGATCTGGCGATTGCCCTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGATGAGGTGGAATGCCT
TGGTGAACTGGCGTTGTCCGGCGCTGTGCGGCCGGTGCGCGGGGTGTTGCCGGCGGCACTGGCGGCGCGCAAGGCCGGGC
GGGCACTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCTTGCCTGGCGTCGGGGTTGAAAGTGTTTGCGGTGGATCATCTG
CTCGAGGCAGTGGCGCATTTCAACGGGCATACGCCGGTCGAGCCTTATGTCTCGGACGGGCTGATCCATGCGGCGAAACC
TTATCCCGACCTCAATGAGGTGCAAGGACAGATGGCCGCGAAACGGGCGCTGCTGATTGCGGCGGCGGGCGCGCATAACC
TGTTGTTCAGTGGGCCGCCGGGAACGGGCAAGACCTTGTTGGCGAGTCGCTTGCCGGGCCTGCTGCCGCCACTCTCCGAA
TGCGAGGCGCTGGAAGTGGCGGCGATTCAATCGGTCGCCAGCGGCGTGCCACTGACCCATTGGCCACAACGGCCCTTTCG
CCAGCCGCACCACTCGGCCTCCGGGCCGGCACTGGTCGGTGGCAGCTCGAAACCGCAACCCGGCGAGATCACCCTCGCCC
ACCACGGCGTACTGTTTCTCGATGAGCTGCCGGAGTTCGATCGCAAGGTACTGGAGGTGCTGCGCGAGCCGCTGGAATCC
GGGCATATCGTGATTGCCCGAGCCAAGGATCGCGTGCGTTTTCCGGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCTTGTGGATATCTTGGCGAGCCGAGCGGCAAGTGCTCTTGTACACCGGACATGGTGCAGCGCTACCGCAACAAGCTAT
CGGGGCCGTTGCTGGATCGGATCGATCTGCACCTGACGGTGGCGCGGGAAGCGACGGCGTTGAATCCGGCAGTGAAGCCA
GGCGAGGACAGCGCCAGTGCGGCAGCCGTGGTGGCCGAGGCACGCGAACGCCAGCAAAAGCGTCAGCGTTGTGCCAATGC
GTTCCTCGATCTGCCAGGCCTGAAGCGGCACTGCCAGTTATCCACAGCCGATGAGAAATGGCTGGAGTCAGCCTGCGAAC
GGCTGACCTTGTCACTGCGCTCAGCCCATCGTTTGCTCAAGGTCGCCAGAACCCTGGCAGACCTTGAGCAAGTCGATGCA
ATCAGCCGTGAGCATCTGGCCGAGGCGCTGCAGTACCGTCCGGCGACGCCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

52.705

100

0.529
  comM Glaesserella parasuis strain SC1401

52.2

100

0.525
  comM Legionella pneumophila str. Paris

50.6

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.09

100

0.453

Multiple sequence alignment