Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ABDX87_RS27190 | Genome accession | NZ_CP155619 |
| Coordinates | 6162585..6163757 (+) | Length | 390 a.a. |
| NCBI ID | WP_346830673.1 | Uniprot ID | - |
| Organism | Pseudomonas abietaniphila strain BHJ04 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6157585..6168757
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABDX87_RS27160 (ABDX87_27160) | - | 6157706..6158497 (+) | 792 | WP_074750489.1 | amino acid ABC transporter ATP-binding protein | - |
| ABDX87_RS27165 (ABDX87_27165) | - | 6158523..6158912 (+) | 390 | WP_346830669.1 | RidA family protein | - |
| ABDX87_RS27170 (ABDX87_27170) | - | 6159148..6159912 (+) | 765 | WP_346830670.1 | IclR family transcriptional regulator | - |
| ABDX87_RS27175 (ABDX87_27175) | - | 6159967..6161172 (+) | 1206 | WP_346830671.1 | amino acid deaminase | - |
| ABDX87_RS27180 (ABDX87_27180) | - | 6161184..6162125 (+) | 942 | WP_346830672.1 | sugar kinase | - |
| ABDX87_RS27185 (ABDX87_27185) | - | 6162126..6162401 (-) | 276 | WP_081568400.1 | peptidylprolyl isomerase | - |
| ABDX87_RS27190 (ABDX87_27190) | pilU | 6162585..6163757 (+) | 1173 | WP_346830673.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ABDX87_RS27195 (ABDX87_27195) | - | 6163982..6164752 (-) | 771 | WP_346830674.1 | 3-hydroxybutyrate dehydrogenase | - |
| ABDX87_RS27200 (ABDX87_27200) | - | 6164763..6166154 (-) | 1392 | WP_346830675.1 | GntP family permease | - |
| ABDX87_RS27205 (ABDX87_27205) | - | 6166429..6167841 (-) | 1413 | WP_346830676.1 | sigma 54-interacting transcriptional regulator | - |
Sequence
Protein
Download Length: 390 a.a. Molecular weight: 43035.18 Da Isoelectric Point: 6.4535
>NTDB_id=998056 ABDX87_RS27190 WP_346830673.1 6162585..6163757(+) (pilU) [Pseudomonas abietaniphila strain BHJ04]
MDFPALLKVLATQDGSDLYLSTGAPPCAKFNGVLKPLGTEALKPGDVALIADGIMDAEQRLDFERELEMNLAFSLSGIGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLHLPPVLLDVVMEKHGLVLFVGATGSGKSTSLAALIDHRNRHASGHIITIED
PVEFIHKHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEDRRPQLLHDLGNNLKAFVSQRLVKTKDGKRRAAVEVMLGTPTIRDLIHRNELTELKGIMEKSTNLGMQTFDNAL
YDLAVEGAITEDEALKNADSANNVRLRLKLHNEGGATHITTPPPAPQPAAQVDVKDWGLVDERDEPGFQG
MDFPALLKVLATQDGSDLYLSTGAPPCAKFNGVLKPLGTEALKPGDVALIADGIMDAEQRLDFERELEMNLAFSLSGIGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLHLPPVLLDVVMEKHGLVLFVGATGSGKSTSLAALIDHRNRHASGHIITIED
PVEFIHKHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEDRRPQLLHDLGNNLKAFVSQRLVKTKDGKRRAAVEVMLGTPTIRDLIHRNELTELKGIMEKSTNLGMQTFDNAL
YDLAVEGAITEDEALKNADSANNVRLRLKLHNEGGATHITTPPPAPQPAAQVDVKDWGLVDERDEPGFQG
Nucleotide
Download Length: 1173 bp
>NTDB_id=998056 ABDX87_RS27190 WP_346830673.1 6162585..6163757(+) (pilU) [Pseudomonas abietaniphila strain BHJ04]
ATGGATTTCCCGGCGTTGTTGAAGGTTCTTGCCACCCAAGACGGATCGGATCTTTACCTCTCCACCGGAGCGCCGCCGTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGTTGGGCACCGAGGCGCTGAAGCCCGGCGATGTGGCGCTGATCGCCGACGGCA
TCATGGACGCCGAACAGCGCCTGGACTTCGAGCGTGAGCTTGAGATGAACCTGGCGTTTTCGTTGTCGGGAATCGGCCGT
TTCCGGATCAACATCTTCAAGCAGCGCAACGAAGTGTCCATCGTCGCGCGCAACATCAAACTCGATATCCCGAAATTCGA
AGACCTGCACCTGCCGCCGGTCTTGCTCGATGTGGTCATGGAAAAGCACGGCCTGGTGCTGTTCGTCGGTGCCACCGGCT
CCGGCAAATCAACGTCTCTAGCCGCGTTGATCGACCACCGTAACCGCCATGCGAGTGGGCATATCATCACCATCGAAGAC
CCGGTGGAGTTCATTCACAAGCACAAGAAATCGATCATCAATCAGCGCGAAGTGGGGGTCGACACCCGCAGTTTTCACGC
GGCATTGAAAAACACCCTGCGTCAGGCACCGGACGTGATTCTGATCGGGGAGATCCGTGATCGCGAAACCATGGAGCACG
CGCTGGCGTTCGCCGACACCGGCCATCTGGCAATCTCGACGCTGCACGCCAACAATGCCAACCAGGCGCTGGACCGCATC
ATCAATTTCTTTCCCGAGGACCGCCGTCCGCAGTTGCTTCACGACCTGGGTAACAACCTCAAGGCGTTCGTCTCGCAGCG
TCTGGTCAAAACCAAGGACGGCAAGCGCAGAGCGGCAGTGGAAGTGATGCTAGGGACGCCCACCATTCGCGACCTGATCC
ACCGCAACGAGCTGACCGAGCTTAAGGGCATCATGGAAAAGTCGACGAATCTGGGGATGCAGACGTTCGATAACGCGTTG
TACGACCTGGCAGTCGAAGGCGCGATCACGGAGGACGAGGCGCTGAAAAATGCCGACTCGGCGAACAACGTGCGGCTGCG
TTTGAAGCTTCACAACGAAGGTGGCGCCACTCATATCACCACACCGCCCCCGGCGCCGCAGCCTGCCGCGCAGGTGGACG
TGAAGGATTGGGGGCTGGTGGATGAGCGGGACGAGCCGGGTTTTCAGGGCTGA
ATGGATTTCCCGGCGTTGTTGAAGGTTCTTGCCACCCAAGACGGATCGGATCTTTACCTCTCCACCGGAGCGCCGCCGTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGTTGGGCACCGAGGCGCTGAAGCCCGGCGATGTGGCGCTGATCGCCGACGGCA
TCATGGACGCCGAACAGCGCCTGGACTTCGAGCGTGAGCTTGAGATGAACCTGGCGTTTTCGTTGTCGGGAATCGGCCGT
TTCCGGATCAACATCTTCAAGCAGCGCAACGAAGTGTCCATCGTCGCGCGCAACATCAAACTCGATATCCCGAAATTCGA
AGACCTGCACCTGCCGCCGGTCTTGCTCGATGTGGTCATGGAAAAGCACGGCCTGGTGCTGTTCGTCGGTGCCACCGGCT
CCGGCAAATCAACGTCTCTAGCCGCGTTGATCGACCACCGTAACCGCCATGCGAGTGGGCATATCATCACCATCGAAGAC
CCGGTGGAGTTCATTCACAAGCACAAGAAATCGATCATCAATCAGCGCGAAGTGGGGGTCGACACCCGCAGTTTTCACGC
GGCATTGAAAAACACCCTGCGTCAGGCACCGGACGTGATTCTGATCGGGGAGATCCGTGATCGCGAAACCATGGAGCACG
CGCTGGCGTTCGCCGACACCGGCCATCTGGCAATCTCGACGCTGCACGCCAACAATGCCAACCAGGCGCTGGACCGCATC
ATCAATTTCTTTCCCGAGGACCGCCGTCCGCAGTTGCTTCACGACCTGGGTAACAACCTCAAGGCGTTCGTCTCGCAGCG
TCTGGTCAAAACCAAGGACGGCAAGCGCAGAGCGGCAGTGGAAGTGATGCTAGGGACGCCCACCATTCGCGACCTGATCC
ACCGCAACGAGCTGACCGAGCTTAAGGGCATCATGGAAAAGTCGACGAATCTGGGGATGCAGACGTTCGATAACGCGTTG
TACGACCTGGCAGTCGAAGGCGCGATCACGGAGGACGAGGCGCTGAAAAATGCCGACTCGGCGAACAACGTGCGGCTGCG
TTTGAAGCTTCACAACGAAGGTGGCGCCACTCATATCACCACACCGCCCCCGGCGCCGCAGCCTGCCGCGCAGGTGGACG
TGAAGGATTGGGGGCTGGTGGATGAGCGGGACGAGCCGGGTTTTCAGGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.906 |
92.821 |
0.528 |
| pilU | Acinetobacter baylyi ADP1 |
52.941 |
91.538 |
0.485 |
| pilU | Vibrio cholerae strain A1552 |
52 |
89.744 |
0.467 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.323 |
95.385 |
0.385 |
| pilT | Pseudomonas stutzeri DSM 10701 |
42.151 |
88.205 |
0.372 |
| pilT | Pseudomonas aeruginosa PAK |
41.57 |
88.205 |
0.367 |