Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFB52_RS28445 Genome accession   NZ_CP155585
Coordinates   6262757..6264250 (+) Length   497 a.a.
NCBI ID   WP_085746788.1    Uniprot ID   -
Organism   Pseudomonas sp. 9.2(2024)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6257757..6269250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFB52_RS28415 (ABFB52_28415) glnK 6258130..6258468 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABFB52_RS28420 (ABFB52_28420) - 6258867..6259127 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  ABFB52_RS28425 (ABFB52_28425) - 6259523..6260050 (+) 528 WP_085746784.1 Bro-N domain-containing protein -
  ABFB52_RS28430 (ABFB52_28430) - 6260101..6260313 (-) 213 WP_305955791.1 HigA family addiction module antitoxin -
  ABFB52_RS28435 (ABFB52_28435) - 6260733..6260906 (+) 174 WP_165369534.1 hypothetical protein -
  ABFB52_RS28440 (ABFB52_28440) - 6260948..6262564 (+) 1617 WP_129973028.1 anti-phage dCTP deaminase -
  ABFB52_RS28445 (ABFB52_28445) comM 6262757..6264250 (+) 1494 WP_085746788.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFB52_RS28450 (ABFB52_28450) - 6264356..6266332 (-) 1977 WP_102717317.1 methyl-accepting chemotaxis protein -
  ABFB52_RS28455 (ABFB52_28455) - 6266513..6267433 (-) 921 WP_085746790.1 LysR substrate-binding domain-containing protein -
  ABFB52_RS28460 (ABFB52_28460) - 6267591..6268985 (+) 1395 WP_085746791.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52786.94 Da        Isoelectric Point: 8.0035

>NTDB_id=997975 ABFB52_RS28445 WP_085746788.1 6262757..6264250(+) (comM) [Pseudomonas sp. 9.2(2024)]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATLVAEARDRQQKRQGCANAFLDLPGLKKHCKLSTADETWLETACERLTLSLRSAHRLLKVARTLADLEKCAD
ISREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=997975 ABFB52_RS28445 WP_085746788.1 6262757..6264250(+) (comM) [Pseudomonas sp. 9.2(2024)]
ATGTCCCTCGCCATCGTCCATAGCCGCGCCCAGATTGGCGTGGATGCCCCCGCTGTCACCGTTGAAGTTCACCTCGCCAA
TGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGACAGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGCTGAATCTGGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
TGGCGAACTGGCGTTGTCCGGTGCCGTGCGGGCGGTGCGCGGGGTGTTGCCGGCGGCACTGGCAGCGCGCAAGGCCGGGC
GGACGCTGGTGGTGCCACGGGCGAATGCCGAGGAGGCTTGTCTGGCATCTGGGCTGAGGGTGATCGCGGTGGATCATTTG
CTGGAGGCCGTGGCGCATTTCAACGGGCATACGCCGGTCGAGCCTTATGTCTCGGATGGGCTGATCCATGCCGCGAAACC
CTATCCCGACCTGAATGAAGTACAGGGCCAACTGGCCGCCAAGCGGGCGCTGCTGATTGCCGCCGCCGGCGCGCACAACC
TGCTGTTCAGCGGGCCGCCGGGCACGGGCAAGACGTTGCTCGCCAGTCGTTTACCGGGGTTGCTGCCACCGCTGGCCGAG
AGTGAGGCGCTGGAGGTGGCGGCGATTCAATCCGTCGCCAGCGGCGCACCGTTGACCCACTGGCCGCAGCGCCCGTTTCG
CCAGCCGCATCACTCGGCCTCCGGGCCGGCACTGGTCGGTGGCAGCTCAAAACCGCAACCCGGCGAAATCACCCTCGCCC
ATCACGGCGTGCTGTTTCTCGATGAACTGCCAGAGTTTGATCGCAAGGTGCTGGAGGTTCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTCATCGCACGGGCCAAGGAAAGGGTGCGGTTTCCCGCGAGATTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAGTGTTCGTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGATTTGCACCTGACGGTGGCGCGGGAGGCGACAGCGTTGAACCCTGCGGTGAAACCG
GGAGAGGACAGCGCCAGCGCGGCCACATTGGTCGCAGAGGCCCGCGATCGTCAGCAAAAACGCCAGGGCTGTGCCAATGC
ATTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAGACGGCGTGCGAAA
GACTGACCTTGTCGCTGCGCTCGGCGCATCGGCTGCTCAAGGTCGCGCGGACGCTGGCGGATCTGGAGAAGTGCGCGGAT
ATCAGTCGCGAACATCTGGCCGAAGCGTTGCAGTATCGGCCGGCGACTCAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Legionella pneumophila str. Paris

49.8

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.8

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.457

Multiple sequence alignment