Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ELZ56_RS08460 Genome accession   NZ_LR134093
Coordinates   1710798..1711802 (-) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain NCTC11965     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705798..1716802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ56_RS08445 (NCTC11965_01600) yajC 1708330..1708590 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  ELZ56_RS08450 (NCTC11965_01601) tgt 1708609..1709748 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  ELZ56_RS08455 (NCTC11965_01602) queA 1709771..1710796 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ELZ56_RS08460 (NCTC11965_01603) ruvB 1710798..1711802 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ELZ56_RS08465 (NCTC11965_01604) ruvA 1711834..1712436 (-) 603 WP_000271546.1 Holliday junction branch migration protein RuvA Machinery gene
  ELZ56_RS08470 (NCTC11965_01605) - 1712450..1712905 (-) 456 WP_000368902.1 ACT domain-containing protein -
  ELZ56_RS08475 (NCTC11965_01606) obgE 1712918..1714210 (-) 1293 WP_000496098.1 GTPase ObgE -
  ELZ56_RS08480 (NCTC11965_01607) rpmA 1714562..1714846 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  ELZ56_RS08485 (NCTC11965_01608) - 1714858..1715178 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ELZ56_RS08490 (NCTC11965_01609) rplU 1715184..1715492 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  ELZ56_RS08495 (NCTC11965_01610) mreD 1715785..1716315 (-) 531 WP_001259929.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=997663 ELZ56_RS08460 WP_001005767.1 1710798..1711802(-) (ruvB) [Staphylococcus aureus strain NCTC11965]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=997663 ELZ56_RS08460 WP_001005767.1 1710798..1711802(-) (ruvB) [Staphylococcus aureus strain NCTC11965]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGCTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACA
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCGCGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515

Multiple sequence alignment