Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC2   Type   Regulator
Locus tag   ABC806_RS00040 Genome accession   NZ_CP155539
Coordinates   5918..6043 (+) Length   41 a.a.
NCBI ID   WP_000799686.1    Uniprot ID   P60242
Organism   Streptococcus pneumoniae TIGR4     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 918..11043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS00015 (ABC806_00015) dnaA 1403..2764 (-) 1362 WP_000660618.1 chromosomal replication initiator protein DnaA -
  ABC806_RS00020 (ABC806_00020) spo0J 2977..3735 (-) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator
  ABC806_RS00025 (ABC806_00025) htrA 3793..4974 (-) 1182 WP_000681597.1 trypsin-like peptidase domain-containing protein Regulator
  ABC806_RS00030 (ABC806_00030) rlmH 5157..5636 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABC806_RS00040 (ABC806_00040) comC/comC2 5918..6043 (+) 126 WP_000799686.1 competence-stimulating peptide ComC Regulator
  ABC806_RS00045 (ABC806_00045) comD/comD2 6064..7389 (+) 1326 WP_000364845.1 competence system sensor histidine kinase ComD Regulator
  ABC806_RS00050 (ABC806_00050) comE 7386..8138 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  ABC806_RS00065 (ABC806_00065) - 8381..8923 (-) 543 WP_001158266.1 TetR/AcrR family transcriptional regulator -
  ABC806_RS00070 (ABC806_00070) - 9102..10704 (+) 1603 Protein_10 YhgE/Pip domain-containing protein -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4907.00 Da        Isoelectric Point: 11.0006

>NTDB_id=997532 ABC806_RS00040 WP_000799686.1 5918..6043(+) (comC/comC2) [Streptococcus pneumoniae TIGR4]
MKNTVKLEQFVALKEKDLQKIKGGEMRISRIILDFLFLRKK

Nucleotide


Download         Length: 126 bp        

>NTDB_id=997532 ABC806_RS00040 WP_000799686.1 5918..6043(+) (comC/comC2) [Streptococcus pneumoniae TIGR4]
ATGAAAAACACAGTTAAATTGGAACAGTTTGTAGCTTTGAAGGAAAAAGACTTACAAAAGATTAAAGGTGGGGAGATGAG
GATTTCAAGAATCATCCTTGATTTTCTTTTCCTACGAAAAAAGTAA

Domains

Predicted by InterproScan.

COMC family (ComC)

(1-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6CJ8
  PDB 6COO
  PDB 6COP
  PDB 6COQ
  PDB 6COR
  PDB 6COS
  PDB 6COW
  PDB 6OBW
  PDB 6OC2
  PDB 6OC4
  PDB 6OLD
  PDB 6V1N

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC2 Streptococcus pneumoniae A66

100

100

1
  comC/comC2 Streptococcus pneumoniae TIGR4

100

100

1
  comC/comC1 Streptococcus pneumoniae R6

80.488

100

0.805
  comC/comC1 Streptococcus pneumoniae G54

80.488

100

0.805
  comC/comC1 Streptococcus pneumoniae D39

80.488

100

0.805
  comC/comC1 Streptococcus pneumoniae Rx1

80.488

100

0.805
  comC Streptococcus mitis SK321

75.61

100

0.756
  comC Streptococcus mitis NCTC 12261

57.5

97.561

0.561

Multiple sequence alignment