Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ABC806_RS00020 Genome accession   NZ_CP155539
Coordinates   2977..3735 (-) Length   252 a.a.
NCBI ID   WP_000410378.1    Uniprot ID   A0A064C0A8
Organism   Streptococcus pneumoniae TIGR4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS00010 (ABC806_00010) dnaN 108..1244 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  ABC806_RS00015 (ABC806_00015) dnaA 1403..2764 (-) 1362 WP_000660618.1 chromosomal replication initiator protein DnaA -
  ABC806_RS00020 (ABC806_00020) spo0J 2977..3735 (-) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator
  ABC806_RS00025 (ABC806_00025) htrA 3793..4974 (-) 1182 WP_000681597.1 trypsin-like peptidase domain-containing protein Regulator
  ABC806_RS00030 (ABC806_00030) rlmH 5157..5636 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABC806_RS00040 (ABC806_00040) comC/comC2 5918..6043 (+) 126 WP_000799686.1 competence-stimulating peptide ComC Regulator
  ABC806_RS00045 (ABC806_00045) comD/comD2 6064..7389 (+) 1326 WP_000364845.1 competence system sensor histidine kinase ComD Regulator
  ABC806_RS00050 (ABC806_00050) comE 7386..8138 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29153.50 Da        Isoelectric Point: 9.0667

>NTDB_id=997530 ABC806_RS00020 WP_000410378.1 2977..3735(-) (spo0J) [Streptococcus pneumoniae TIGR4]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=997530 ABC806_RS00020 WP_000410378.1 2977..3735(-) (spo0J) [Streptococcus pneumoniae TIGR4]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTTTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
ATTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508

Multiple sequence alignment