Detailed information    

insolico Bioinformatically predicted

Overview


Name   comD/comD2   Type   Regulator
Locus tag   ABC810_RS00045 Genome accession   NZ_CP155532
Coordinates   6202..7527 (+) Length   441 a.a.
NCBI ID   WP_000364843.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP264     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 1202..12527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS00015 (ABC810_00015) dnaA 1541..2902 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  ABC810_RS00020 (ABC810_00020) spo0J 3115..3873 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  ABC810_RS00025 (ABC810_00025) htrA 3931..5112 (-) 1182 WP_000681598.1 S1C family serine protease Regulator
  ABC810_RS00030 (ABC810_00030) rlmH 5295..5774 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABC810_RS00040 (ABC810_00040) comC/comC2 6056..6181 (+) 126 WP_000799694.1 competence-stimulating peptide ComC Regulator
  ABC810_RS00045 (ABC810_00045) comD/comD2 6202..7527 (+) 1326 WP_000364843.1 competence system sensor histidine kinase ComD Regulator
  ABC810_RS00050 (ABC810_00050) comE 7524..8276 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  ABC810_RS00065 (ABC810_00065) - 8519..9061 (-) 543 WP_001158266.1 TetR/AcrR family transcriptional regulator -
  ABC810_RS00070 (ABC810_00070) - 9240..10842 (+) 1603 Protein_10 YhgE/Pip domain-containing protein -

Sequence


Protein


Download         Length: 441 a.a.        Molecular weight: 51455.07 Da        Isoelectric Point: 7.5816

>NTDB_id=997068 ABC810_RS00045 WP_000364843.1 6202..7527(+) (comD/comD2) [Streptococcus pneumoniae strain SP264]
MDLLGFGTVIVHFLIISHSYRLICKGRINRKELYIFGAYTLLTEIVLEFSFYLLYLDKIGIERFLFPLGLYSYFRWMKQY
ERDRGLFLSLLLSLLYESTHNFLSVTFSSITGDNFVLQYHFPFFFVVTVLTYFVTLKIIYYFHLELAYFDKDYLYPFLKK
VFFALLLLHIVSFVSDMVSTIKHLNSFGSILSSIVFISLLLTFFAMNSHKVQMEKEIALKQKKFEQKHLQNYTDEIVGLY
NEIRGFRHDYAGMLVSMQMAIDSGNLQEIDRIYNEVLVKANHKLRSDKYTYFDLNNIEDSALRSLVAQSIVYARNNGVEF
TLEVKDTITKLPIELLDLVRIMSVLLNNAVEGSADSYKKQMEVAVIKMETETVMVIQNSCKMTMTPSGDLFALGFSTKGR
NRGVGLNNVKELLDKYNNIILETEMEGSTFRQIIRFKREFE

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=997068 ABC810_RS00045 WP_000364843.1 6202..7527(+) (comD/comD2) [Streptococcus pneumoniae strain SP264]
ATGGATTTACTTGGATTTGGGACAGTTATTGTTCATTTTTTAATTATTAGTCACAGTTACCGTTTAATTTGTAAAGGTCG
AATAAATAGAAAAGAATTATACATTTTTGGTGCTTATACATTACTAACTGAAATAGTACTTGAATTTTCCTTTTATCTTC
TATATTTAGATAAAATAGGGATTGAAAGATTTTTATTTCCTTTGGGCTTATATTCCTATTTTCGATGGATGAAACAGTAT
GAGAGGGATAGAGGACTATTCCTAAGTTTACTACTATCTCTTTTATATGAGAGCACTCATAACTTTCTGTCCGTAACTTT
CTCCTCTATAACAGGAGATAATTTTGTTTTACAATATCATTTCCCATTCTTTTTCGTTGTGACGGTGTTAACCTATTTTG
TTACATTAAAAATCATTTATTATTTCCATTTGGAACTAGCCTATTTTGACAAGGACTACCTTTATCCTTTCTTGAAAAAA
GTATTTTTTGCTTTACTATTGCTACATATTGTATCTTTCGTTTCAGATATGGTAAGTACGATTAAACATTTGAATAGTTT
TGGAAGTATTTTGTCATCTATTGTCTTTATCTCTCTCCTTTTGACCTTCTTTGCAATGAATTCTCATAAAGTTCAAATGG
AGAAAGAGATTGCTTTGAAGCAGAAGAAATTTGAACAGAAACATTTACAGAATTACACAGATGAAATTGTTGGTCTGTAT
AATGAAATCCGTGGTTTTCGACATGATTATGCTGGAATGCTTGTCAGCATGCAGATGGCAATTGACAGTGGTAATTTACA
GGAAATTGACAGAATTTACAATGAAGTTTTAGTCAAAGCAAATCATAAATTGCGTTCAGATAAGTACACTTACTTTGATT
TGAACAACATAGAAGACTCAGCTTTACGAAGTTTGGTTGCTCAGTCAATTGTCTATGCTCGAAATAATGGTGTAGAGTTT
ACACTGGAAGTAAAAGATACGATTACCAAGCTTCCAATTGAACTATTGGATTTGGTTCGTATCATGAGCGTTTTATTGAA
TAATGCTGTCGAAGGATCGGCTGATAGCTATAAAAAGCAGATGGAAGTAGCAGTTATTAAGATGGAAACTGAAACAGTTA
TGGTGATTCAGAATTCATGTAAAATGACGATGACTCCTTCAGGAGATCTATTTGCCTTAGGATTCTCCACTAAGGGAAGA
AATCGCGGAGTCGGATTAAATAATGTGAAAGAACTACTAGATAAGTACAACAATATTATTTTAGAAACAGAGATGGAAGG
CAGTACATTTAGACAAATCATTAGATTTAAGAGGGAATTTGAATGA

Domains


Predicted by InterproScan.

(334-434)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus pneumoniae TIGR4

99.32

100

0.993

  comD/comD1 Streptococcus pneumoniae Rx1

96.599

100

0.966

  comD/comD1 Streptococcus pneumoniae D39

96.599

100

0.966

  comD/comD1 Streptococcus pneumoniae R6

96.599

100

0.966

  comD Streptococcus mitis SK321

91.837

100

0.918

  comD Streptococcus mitis NCTC 12261

86.621

100

0.866

  comD/comD2 Streptococcus gordonii strain NCTC7865

49.202

85.261

0.42

  comD/comD1 Streptococcus gordonii str. Challis substr. CH1

49.465

84.807

0.419


Multiple sequence alignment