Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ABC810_RS00020 Genome accession   NZ_CP155532
Coordinates   3115..3873 (-) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP264     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..8873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS00010 (ABC810_00010) dnaN 246..1382 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  ABC810_RS00015 (ABC810_00015) dnaA 1541..2902 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  ABC810_RS00020 (ABC810_00020) spo0J 3115..3873 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  ABC810_RS00025 (ABC810_00025) htrA 3931..5112 (-) 1182 WP_000681598.1 S1C family serine protease Regulator
  ABC810_RS00030 (ABC810_00030) rlmH 5295..5774 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABC810_RS00040 (ABC810_00040) comC/comC2 6056..6181 (+) 126 WP_000799694.1 competence-stimulating peptide ComC Regulator
  ABC810_RS00045 (ABC810_00045) comD/comD2 6202..7527 (+) 1326 WP_000364843.1 competence system sensor histidine kinase ComD Regulator
  ABC810_RS00050 (ABC810_00050) comE 7524..8276 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=997065 ABC810_RS00020 WP_000410383.1 3115..3873(-) (spo0J) [Streptococcus pneumoniae strain SP264]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=997065 ABC810_RS00020 WP_000410383.1 3115..3873(-) (spo0J) [Streptococcus pneumoniae strain SP264]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment