Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAH687_RS07125 Genome accession   NZ_CP155530
Coordinates   1433691..1434764 (+) Length   357 a.a.
NCBI ID   WP_346395552.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TN5S8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428691..1439764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS07105 (AAH687_07105) - 1429392..1430060 (-) 669 WP_017357860.1 YigZ family protein -
  AAH687_RS07110 (AAH687_07110) degS 1430282..1431457 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAH687_RS07115 (AAH687_07115) degU 1431522..1432211 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAH687_RS07120 (AAH687_07120) - 1432423..1433265 (+) 843 WP_007499966.1 DegV family protein -
  AAH687_RS07125 (AAH687_07125) comFA 1433691..1434764 (+) 1074 WP_346395552.1 helicase-related protein Machinery gene
  AAH687_RS07130 (AAH687_07130) - 1434829..1435122 (+) 294 WP_008348267.1 competence protein ComFB -
  AAH687_RS07135 (AAH687_07135) comFC 1435119..1435805 (+) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  AAH687_RS07140 (AAH687_07140) - 1435862..1436281 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AAH687_RS07145 (AAH687_07145) flgM 1436361..1436624 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAH687_RS07150 (AAH687_07150) - 1436643..1437125 (+) 483 WP_008348261.1 flagellar protein FlgN -
  AAH687_RS07155 (AAH687_07155) flgK 1437141..1438661 (+) 1521 WP_008348259.1 flagellar hook-associated protein FlgK -
  AAH687_RS07160 (AAH687_07160) flgL 1438670..1439581 (+) 912 WP_108611024.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 40907.61 Da        Isoelectric Point: 10.6472

>NTDB_id=996943 AAH687_RS07125 WP_346395552.1 1433691..1434764(+) (comFA) [Bacillus altitudinis strain TN5S8]
MKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGMSVCIATPRTDVVLELEPR
MRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDERLQFAVLKSMKKTGVRIYLSAT
PSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHEHITKKKRVLLFVPSISTMKKVT
HILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIFTESALVQISGRAGRHPDF
FNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=996943 AAH687_RS07125 WP_346395552.1 1433691..1434764(+) (comFA) [Bacillus altitudinis strain TN5S8]
ATGAAAGAAACAAGACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGT
AGAAGCAATCCAAAACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAA
TAAAATATGCGCTAAATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGA
ATGAGAAAGGCATTTCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTAT
GATCGCTACAACCCATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTT
ATTCAATCGATGAACGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACA
CCATCTAAAAAAATGCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACC
GTTGCCTGTCCCAACATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGA
ACTGGCTGCATGAACATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACT
CATATTCTTCAAGGTCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTT
CAGAGATCATAGATACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCG
TATTAGGTGCGGAATCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTT
TTTAACGGAGACGTGTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAA
TAATACAGCTGAAAAAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(218-317)

Type III restriction enzyme, res subunit (ResIII)

(14-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.184

97.479

0.557
  comFA/cflA Streptococcus pneumoniae Rx1

41.57

96.359

0.401
  comFA/cflA Streptococcus pneumoniae D39

41.57

96.359

0.401
  comFA/cflA Streptococcus pneumoniae R6

41.57

96.359

0.401
  comFA/cflA Streptococcus pneumoniae TIGR4

41.279

96.359

0.398
  comFA/cflA Streptococcus mitis NCTC 12261

40.988

96.359

0.395
  comFA/cflA Streptococcus mitis SK321

39.826

96.359

0.384
  comFA Latilactobacillus sakei subsp. sakei 23K

39.942

96.078

0.384
  comFA Lactococcus lactis subsp. cremoris KW2

38.416

95.518

0.367

Multiple sequence alignment