Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAH687_RS07115 Genome accession   NZ_CP155530
Coordinates   1431522..1432211 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain TN5S8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426522..1437211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS07095 (AAH687_07095) - 1427205..1428272 (+) 1068 WP_007499956.1 MraY family glycosyltransferase -
  AAH687_RS07100 (AAH687_07100) - 1428310..1429407 (-) 1098 Protein_1359 LCP family protein -
  AAH687_RS07105 (AAH687_07105) - 1429392..1430060 (-) 669 WP_017357860.1 YigZ family protein -
  AAH687_RS07110 (AAH687_07110) degS 1430282..1431457 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAH687_RS07115 (AAH687_07115) degU 1431522..1432211 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAH687_RS07120 (AAH687_07120) - 1432423..1433265 (+) 843 WP_007499966.1 DegV family protein -
  AAH687_RS07125 (AAH687_07125) comFA 1433691..1434764 (+) 1074 WP_346395552.1 helicase-related protein Machinery gene
  AAH687_RS07130 (AAH687_07130) - 1434829..1435122 (+) 294 WP_008348267.1 competence protein ComFB -
  AAH687_RS07135 (AAH687_07135) comFC 1435119..1435805 (+) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  AAH687_RS07140 (AAH687_07140) - 1435862..1436281 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AAH687_RS07145 (AAH687_07145) flgM 1436361..1436624 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAH687_RS07150 (AAH687_07150) - 1436643..1437125 (+) 483 WP_008348261.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=996942 AAH687_RS07115 WP_008348273.1 1431522..1432211(+) (degU) [Bacillus altitudinis strain TN5S8]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=996942 AAH687_RS07115 WP_008348273.1 1431522..1432211(+) (degU) [Bacillus altitudinis strain TN5S8]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment