Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   ELZ47_RS05975 Genome accession   NZ_LR134002
Coordinates   1149506..1150348 (+) Length   280 a.a.
NCBI ID   WP_125331054.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1144506..1155348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS05945 (NCTC10904_01170) dapA 1144820..1145755 (+) 936 WP_002902934.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ELZ47_RS05950 (NCTC10904_01171) - 1145815..1146414 (+) 600 WP_125331049.1 hypothetical protein -
  ELZ47_RS05955 (NCTC10904_01172) - 1146707..1147045 (+) 339 WP_002895476.1 ATP cone domain-containing protein -
  ELZ47_RS05960 (NCTC10904_01173) ylqF 1147188..1148039 (+) 852 WP_125331051.1 ribosome biogenesis GTPase YlqF -
  ELZ47_RS05965 (NCTC10904_01174) - 1148026..1148790 (+) 765 WP_126435571.1 ribonuclease HII -
  ELZ47_RS05970 (NCTC10904_01175) - 1148810..1149373 (+) 564 WP_125331053.1 sugar O-acetyltransferase -
  ELZ47_RS05975 (NCTC10904_01176) dprA/cilB/dalA 1149506..1150348 (+) 843 WP_125331054.1 DNA-processing protein DprA Machinery gene
  ELZ47_RS05980 (NCTC10904_01177) topA 1150433..1152526 (+) 2094 WP_125331055.1 type I DNA topoisomerase -
  ELZ47_RS05985 (NCTC10904_01178) - 1152585..1153079 (+) 495 WP_125331056.1 phosphoribosylanthranilate isomerase -
  ELZ47_RS05990 (NCTC10904_01179) trmFO 1153173..1154507 (+) 1335 WP_125331057.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ELZ47_RS05995 (NCTC10904_01180) - 1154606..1154956 (+) 351 WP_002906562.1 DUF1801 domain-containing protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30895.57 Da        Isoelectric Point: 6.7408

>NTDB_id=996702 ELZ47_RS05975 WP_125331054.1 1149506..1150348(+) (dprA/cilB/dalA) [Streptococcus sanguinis strain NCTC 10904]
MNNFEIYKMKKAGLTNHQVLNVLRYAESRDGKLSLRDKAVVSECRNPALFIEKYKGLDLPALKEEFELFPSFSILDDIYP
WDLCEIYDAPTLLFYQGNLKLLELPKAAVVGSRDSSKQGNASVQKIVKELNNELVIVSGLARGIDTAAHMAALQNGGQTI
AVIGTGLDVFYPKANKKLQSYIGKNHLLLTEYGPGEQPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGKSDGCHHLIQEGAKCITSGSDVLSEFDF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=996702 ELZ47_RS05975 WP_125331054.1 1149506..1150348(+) (dprA/cilB/dalA) [Streptococcus sanguinis strain NCTC 10904]
ATGAATAATTTTGAGATTTATAAAATGAAAAAAGCTGGTTTGACTAATCATCAGGTTTTAAACGTTTTGAGATACGCCGA
GAGTAGAGATGGCAAGCTTTCTCTCCGAGATAAGGCTGTCGTATCTGAGTGCCGTAATCCCGCTCTCTTTATAGAGAAAT
ACAAGGGGCTTGATTTACCAGCTTTGAAGGAAGAATTTGAACTTTTCCCGTCCTTTTCTATTTTGGATGATATTTACCCT
TGGGATTTATGCGAGATTTATGATGCCCCGACTTTGTTATTTTATCAGGGAAATCTAAAACTACTAGAATTGCCCAAGGC
AGCGGTCGTTGGCAGTCGAGACAGCAGCAAGCAAGGAAATGCCTCCGTACAAAAGATTGTCAAGGAGCTAAATAATGAAT
TGGTTATCGTCAGCGGCCTGGCTCGTGGAATAGATACAGCGGCTCACATGGCAGCCTTGCAAAACGGAGGTCAGACGATT
GCTGTCATCGGAACGGGATTAGATGTCTTTTATCCTAAGGCAAATAAAAAACTACAGTCTTACATTGGCAAAAATCATTT
ATTGCTGACAGAGTATGGTCCAGGTGAACAGCCTTTGAAGTTTCATTTTCCAGAGCGCAATCGTATCATCGCTGGTCTCT
GTCGAGGCGTCATCGTGGCAGAAGCTAAGATGCGCTCAGGCAGCCTGATTACCTGTGAGCGAGCGATGGAAGAAGGGCGG
GATGTCTTTGCTATTCCGGGGTCTATTTTAGATGGTAAATCTGACGGTTGCCATCATCTGATTCAAGAGGGCGCAAAGTG
CATCACATCAGGATCTGACGTCCTTTCTGAGTTTGATTTTTAA

Domains

Predicted by InterProScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(74-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.786

100

0.768
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae D39

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae R6

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

76.429

100

0.764
  dprA/cilB/dalA Streptococcus mitis SK321

76.071

100

0.761
  dprA Streptococcus mutans UA159

66.786

100

0.668
  dprA Lactococcus lactis subsp. cremoris KW2

57.554

99.286

0.571

Multiple sequence alignment