Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QMM73_RS10185 | Genome accession | NZ_AP027135 |
| Coordinates | 2048785..2049255 (-) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain JP089 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2018820..2075950 | 2048785..2049255 | within | 0 |
Gene organization within MGE regions
Location: 2018820..2075950
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMM73_RS09965 (JP089_18510) | scn | 2018820..2019170 (-) | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
| QMM73_RS09970 (JP089_18520) | - | 2019852..2020301 (+) | 450 | WP_000727643.1 | chemotaxis-inhibiting protein CHIPS | - |
| QMM73_RS09975 | - | 2020394..2020728 (-) | 335 | Protein_1926 | SH3 domain-containing protein | - |
| QMM73_RS09980 (JP089_18540) | sak | 2021379..2021870 (-) | 492 | WP_000920041.1 | staphylokinase | - |
| QMM73_RS09985 (JP089_18550) | - | 2022061..2022816 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| QMM73_RS09990 (JP089_18560) | - | 2022828..2023082 (-) | 255 | WP_000611512.1 | phage holin | - |
| QMM73_RS09995 | - | 2023134..2023241 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| QMM73_RS10000 (JP089_18570) | pepG1 | 2023294..2023428 (-) | 135 | WP_000880504.1 | type I toxin-antitoxin system toxin PepG1 | - |
| QMM73_RS10005 (JP089_18580) | - | 2023613..2023987 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| QMM73_RS10010 (JP089_18590) | - | 2024043..2024330 (-) | 288 | WP_001262620.1 | hypothetical protein | - |
| QMM73_RS10015 (JP089_18600) | - | 2024376..2024528 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| QMM73_RS10020 (JP089_18610) | - | 2024521..2028303 (-) | 3783 | WP_000582177.1 | phage tail spike protein | - |
| QMM73_RS10025 (JP089_18620) | - | 2028319..2029803 (-) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| QMM73_RS10030 (JP089_18630) | - | 2029800..2034329 (-) | 4530 | WP_001796452.1 | phage tail tape measure protein | - |
| QMM73_RS10035 (JP089_18640) | - | 2034386..2034520 (-) | 135 | WP_000364140.1 | hypothetical protein | - |
| QMM73_RS10040 (JP089_18650) | - | 2034574..2034924 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| QMM73_RS10045 | - | 2034974..2035204 (-) | 231 | Protein_1940 | Ig-like domain-containing protein | - |
| QMM73_RS10050 (JP089_18670) | - | 2035240..2035884 (-) | 645 | WP_000268740.1 | major tail protein | - |
| QMM73_RS10055 (JP089_18680) | - | 2035885..2036292 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| QMM73_RS10060 (JP089_18690) | - | 2036289..2036693 (-) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| QMM73_RS10065 (JP089_18700) | - | 2036690..2037052 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| QMM73_RS10070 (JP089_18710) | - | 2037036..2037320 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| QMM73_RS10075 (JP089_18720) | - | 2037310..2037594 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| QMM73_RS10080 (JP089_18730) | - | 2037614..2038759 (-) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| QMM73_RS10085 (JP089_18740) | - | 2038783..2039520 (-) | 738 | WP_061839009.1 | head maturation protease, ClpP-related | - |
| QMM73_RS10090 (JP089_18750) | - | 2039504..2040691 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| QMM73_RS10095 (JP089_18760) | - | 2040707..2042368 (-) | 1662 | WP_061839008.1 | terminase large subunit | - |
| QMM73_RS10100 (JP089_18770) | - | 2042365..2042709 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| QMM73_RS10105 (JP089_18780) | - | 2042839..2043138 (-) | 300 | WP_000988330.1 | HNH endonuclease | - |
| QMM73_RS10110 (JP089_18790) | - | 2043370..2043786 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| QMM73_RS10115 (JP089_18800) | - | 2043814..2044014 (-) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| QMM73_RS10120 (JP089_18810) | - | 2044014..2044664 (-) | 651 | WP_001005262.1 | hypothetical protein | - |
| QMM73_RS10125 (JP089_18830) | - | 2044823..2044972 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| QMM73_RS10130 (JP089_18840) | - | 2044969..2045175 (-) | 207 | WP_000195810.1 | DUF1381 domain-containing protein | - |
| QMM73_RS10135 (JP089_18850) | - | 2045212..2045718 (-) | 507 | WP_001061842.1 | dUTPase | - |
| QMM73_RS10140 (JP089_18860) | - | 2045733..2045894 (-) | 162 | WP_178135738.1 | hypothetical protein | - |
| QMM73_RS10145 (JP089_18870) | - | 2046024..2046176 (-) | 153 | WP_016170781.1 | hypothetical protein | - |
| QMM73_RS10150 (JP089_18880) | - | 2046177..2046350 (-) | 174 | WP_000028424.1 | hypothetical protein | - |
| QMM73_RS10155 (JP089_18890) | - | 2046340..2046591 (-) | 252 | WP_001065046.1 | DUF1024 family protein | - |
| QMM73_RS10160 (JP089_18900) | - | 2046606..2046848 (-) | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| QMM73_RS10165 (JP089_18910) | - | 2046852..2047220 (-) | 369 | WP_000101270.1 | SA1788 family PVL leukocidin-associated protein | - |
| QMM73_RS10170 (JP089_18920) | - | 2047233..2047637 (-) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QMM73_RS10175 (JP089_18930) | - | 2047646..2047864 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| QMM73_RS10180 (JP089_18940) | - | 2047871..2048755 (-) | 885 | WP_031833239.1 | DnaD domain protein | - |
| QMM73_RS10185 (JP089_18950) | ssbA | 2048785..2049255 (-) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| QMM73_RS10190 (JP089_18960) | - | 2049256..2049873 (-) | 618 | WP_072507301.1 | MBL fold metallo-hydrolase | - |
| QMM73_RS10195 (JP089_18970) | - | 2049954..2050874 (-) | 921 | WP_274543942.1 | recombinase RecT | - |
| QMM73_RS10200 (JP089_18980) | - | 2050876..2052819 (-) | 1944 | WP_281961702.1 | AAA family ATPase | - |
| QMM73_RS10205 (JP089_18990) | - | 2052828..2053091 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| QMM73_RS10210 (JP089_19000) | - | 2053100..2053360 (-) | 261 | WP_000291507.1 | DUF1108 family protein | - |
| QMM73_RS10215 (JP089_19010) | - | 2053365..2053667 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| QMM73_RS10220 (JP089_19020) | - | 2053759..2053920 (-) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| QMM73_RS10225 (JP089_19030) | - | 2053917..2054237 (-) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QMM73_RS10230 (JP089_19040) | - | 2054296..2054928 (+) | 633 | WP_061838896.1 | hypothetical protein | - |
| QMM73_RS10235 (JP089_19050) | - | 2054943..2055083 (-) | 141 | WP_061838897.1 | hypothetical protein | - |
| QMM73_RS10240 (JP089_19060) | - | 2055114..2055308 (-) | 195 | WP_001148857.1 | hypothetical protein | - |
| QMM73_RS10245 (JP089_19070) | - | 2055324..2056073 (-) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| QMM73_RS10250 (JP089_19080) | - | 2056130..2056669 (+) | 540 | WP_061838898.1 | hypothetical protein | - |
| QMM73_RS10255 (JP089_19090) | - | 2056693..2056953 (-) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QMM73_RS10260 (JP089_19100) | - | 2056971..2057195 (-) | 225 | WP_000333485.1 | DUF739 family protein | - |
| QMM73_RS10265 (JP089_19110) | - | 2057357..2057737 (+) | 381 | WP_049948305.1 | helix-turn-helix domain-containing protein | - |
| QMM73_RS10270 (JP089_19120) | - | 2057759..2058232 (+) | 474 | WP_031761865.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QMM73_RS10275 (JP089_19130) | - | 2058233..2058940 (+) | 708 | WP_061838899.1 | Ltp family lipoprotein | - |
| QMM73_RS10280 (JP089_19140) | - | 2059091..2059273 (+) | 183 | WP_000694772.1 | hypothetical protein | - |
| QMM73_RS10285 (JP089_19150) | - | 2059373..2059837 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| QMM73_RS10290 (JP089_19160) | - | 2059896..2060933 (+) | 1038 | WP_061838900.1 | site-specific integrase | - |
| QMM73_RS10295 (JP089_19170) | sph | 2060984..2061814 (+) | 831 | Protein_1990 | sphingomyelin phosphodiesterase | - |
| QMM73_RS10300 (JP089_19180) | lukG | 2062277..2063293 (-) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| QMM73_RS10305 (JP089_19190) | lukH | 2063315..2064367 (-) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| QMM73_RS10310 (JP089_19200) | - | 2064803..2066026 (+) | 1224 | WP_061838901.1 | ArgE/DapE family deacylase | - |
| QMM73_RS10315 (JP089_19210) | - | 2066524..2067393 (-) | 870 | WP_001108473.1 | DMT family transporter | - |
| QMM73_RS10320 (JP089_19220) | hemA | 2067396..2068598 (-) | 1203 | WP_000278575.1 | 5-aminolevulinate synthase | - |
| QMM73_RS10325 (JP089_19230) | - | 2069114..2070421 (+) | 1308 | WP_061838902.1 | TrkH family potassium uptake protein | - |
| QMM73_RS10330 (JP089_19240) | groL | 2070961..2072577 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| QMM73_RS10335 (JP089_19250) | groES | 2072653..2072937 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QMM73_RS10340 (JP089_19260) | mroQ | 2073112..2073855 (+) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QMM73_RS10345 (JP089_19270) | - | 2073880..2075127 (-) | 1248 | WP_072519029.1 | SdrH family protein | - |
| QMM73_RS10350 (JP089_19280) | - | 2075324..2075950 (+) | 627 | WP_000522384.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=99661 QMM73_RS10185 WP_029549393.1 2048785..2049255(-) (ssbA) [Staphylococcus aureus strain JP089]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=99661 QMM73_RS10185 WP_029549393.1 2048785..2049255(-) (ssbA) [Staphylococcus aureus strain JP089]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |