Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QMM94_RS04480 Genome accession   NZ_AP027134
Coordinates   937121..938107 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 932121..943107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS04460 (JP008_08620) trpS 932362..933351 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  QMM94_RS04465 (JP008_08630) spxA 933646..934041 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QMM94_RS04470 (JP008_08640) mecA 934412..935131 (+) 720 WP_001217728.1 adaptor protein MecA -
  QMM94_RS04475 (JP008_08650) ltrA 935694..936980 (+) 1287 WP_209206061.1 group II intron reverse transcriptase/maturase -
  QMM94_RS04480 (JP008_08660) coiA 937121..938107 (+) 987 WP_000959287.1 competence protein CoiA family protein Machinery gene
  QMM94_RS04485 (JP008_08670) pepF 938155..939963 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  QMM94_RS04490 (JP008_08680) yjbH 940423..941229 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  QMM94_RS04495 (JP008_08690) - 941252..941617 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QMM94_RS04500 (JP008_08700) - 941721..942314 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  QMM94_RS04505 (JP008_08710) - 942500..942847 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=99596 QMM94_RS04480 WP_000959287.1 937121..938107(+) (coiA) [Staphylococcus aureus strain JP008]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=99596 QMM94_RS04480 WP_000959287.1 937121..938107(+) (coiA) [Staphylococcus aureus strain JP008]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment