Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AAVB50_RS10210 Genome accession   NZ_CP154923
Coordinates   1883836..1884132 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain FUA2233     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878836..1889132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS10185 (AAVB50_10180) yqhB 1878893..1880221 (-) 1329 WP_003230150.1 hemolysin family protein -
  AAVB50_RS10190 (AAVB50_10185) corA 1880364..1881317 (+) 954 WP_015483432.1 magnesium transporter CorA -
  AAVB50_RS10195 (AAVB50_10190) - 1881319..1881516 (+) 198 WP_129134319.1 hypothetical protein -
  AAVB50_RS10200 (AAVB50_10195) comGA 1881728..1882798 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  AAVB50_RS10205 (AAVB50_10200) comGB 1882785..1883822 (+) 1038 WP_345806075.1 comG operon protein ComGB Machinery gene
  AAVB50_RS10210 (AAVB50_10205) comGC 1883836..1884132 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AAVB50_RS10215 (AAVB50_10210) comGD 1884122..1884553 (+) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  AAVB50_RS10220 (AAVB50_10215) comGE 1884537..1884884 (+) 348 WP_345806076.1 ComG operon protein 5 Machinery gene
  AAVB50_RS10225 (AAVB50_10220) comGF 1884910..1885293 (+) 384 WP_345806077.1 ComG operon protein ComGF Machinery gene
  AAVB50_RS10230 (AAVB50_10225) comGG 1885294..1885668 (+) 375 WP_345806078.1 ComG operon protein ComGG Machinery gene
  AAVB50_RS10235 (AAVB50_10230) spoIIT 1885739..1885918 (+) 180 WP_003230176.1 YqzE family protein -
  AAVB50_RS10240 (AAVB50_10235) yqzG 1885960..1886286 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  AAVB50_RS10245 (AAVB50_10240) tapA 1886558..1887319 (+) 762 WP_345806079.1 amyloid fiber anchoring/assembly protein TapA -
  AAVB50_RS10250 (AAVB50_10245) sipW 1887303..1887875 (+) 573 WP_072692741.1 signal peptidase I -
  AAVB50_RS10255 (AAVB50_10250) tasA 1887939..1888724 (+) 786 WP_345806080.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=995533 AAVB50_RS10210 WP_003230162.1 1883836..1884132(+) (comGC) [Bacillus subtilis strain FUA2233]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=995533 AAVB50_RS10210 WP_003230162.1 1883836..1884132(+) (comGC) [Bacillus subtilis strain FUA2233]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment