Detailed information NTG0995209

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: AAYR28_RS16280
• Genome accession: NZ_CP154909
• Coordinates: 3154896..3155552 (-)
• Length: 218 a.a.
• NCBI ID: WP_251232415.1
• Uniprot ID: -
• Organism: Bacillus safensis strain FUA2117
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3149896..3160552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAYR28_RS16245 (AAYR28_16245)	fliW	3150034..3150468 (-)	435	WP_024423615.1	flagellar assembly protein FliW	-
AAYR28_RS16250 (AAYR28_16250)	-	3150497..3151075 (-)	579	WP_024423616.1	DUF6470 family protein	-
AAYR28_RS16255 (AAYR28_16255)	flgL	3151122..3152030 (-)	909	WP_034281095.1	flagellar hook-associated protein FlgL	-
AAYR28_RS16260 (AAYR28_16260)	flgK	3152040..3153560 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
AAYR28_RS16265 (AAYR28_16265)	-	3153576..3154058 (-)	483	WP_024423619.1	flagellar protein FlgN	-
AAYR28_RS16270 (AAYR28_16270)	flgM	3154077..3154340 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
AAYR28_RS16275 (AAYR28_16275)	-	3154420..3154839 (-)	420	WP_120207796.1	TIGR03826 family flagellar region protein	-
AAYR28_RS16280 (AAYR28_16280)	comFC	3154896..3155552 (-)	657	WP_251232415.1	ComF family protein	Machinery gene
AAYR28_RS16285 (AAYR28_16285)	-	3155579..3155872 (-)	294	WP_024423623.1	competence protein ComFB	-
AAYR28_RS16290 (AAYR28_16290)	comFA	3155921..3157318 (-)	1398	WP_142925562.1	DEAD/DEAH box helicase	Machinery gene
AAYR28_RS16295 (AAYR28_16295)	-	3157439..3158281 (-)	843	WP_024423625.1	DegV family protein	-
AAYR28_RS16300 (AAYR28_16300)	degU	3158497..3159186 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AAYR28_RS16305 (AAYR28_16305)	degS	3159251..3160426 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 218 a.a.
• Molecular weight: 24883.03 Da
• Isoelectric Point: 10.0278

>NTDB_id=995209 AAYR28_RS16280 WP_251232415.1 3154896..3155552(-) (comFC) [Bacillus safensis strain FUA2117]
MPAFTWKSFLLLNDDRLCVACKNHLVKIERPICPTCGRAQSNDQLCQDCKSWNERSDSIKVLVKNRSVYTYSELMKDVLA
RFKFRGDTALAELFKRDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN
ERLDQKGLFQIKQTDAVVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 657 bp

>NTDB_id=995209 AAYR28_RS16280 WP_251232415.1 3154896..3155552(-) (comFC) [Bacillus safensis strain FUA2117]
GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGTCTTTGTGTAGCATGTAAGAATCACTTAGTAAA
GATTGAACGTCCTATTTGTCCAACATGCGGAAGGGCGCAGTCAAATGACCAATTATGCCAGGACTGTAAGAGTTGGAATG
AACGCTCTGATTCTATTAAAGTCCTTGTAAAAAATAGGTCAGTTTATACTTACAGCGAGTTGATGAAAGATGTCCTTGCC
CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTAAAAGAGATGTACAAGCAGCATTTAAACATTCCTTCTG
CATAAAAGACCCATTGCTGATACCGATCCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA
TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT
GAACGCCTAGATCAAAAAGGATTGTTTCAAATCAAGCAAACAGATGCGGTTGTTCAAAGGGATATTATATTAGTTGATGA
TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA
CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (127-216)

• Double zinc ribbon domain (DZR_2) (14-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.537	99.083	0.491
comFC/cflB	Streptococcus pneumoniae TIGR4	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae D39	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae R6	36.744	98.624	0.362