Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAYR28_RS16290 Genome accession   NZ_CP154909
Coordinates   3155921..3157318 (-) Length   465 a.a.
NCBI ID   WP_142925562.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3150921..3162318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS16255 (AAYR28_16255) flgL 3151122..3152030 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  AAYR28_RS16260 (AAYR28_16260) flgK 3152040..3153560 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  AAYR28_RS16265 (AAYR28_16265) - 3153576..3154058 (-) 483 WP_024423619.1 flagellar protein FlgN -
  AAYR28_RS16270 (AAYR28_16270) flgM 3154077..3154340 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAYR28_RS16275 (AAYR28_16275) - 3154420..3154839 (-) 420 WP_120207796.1 TIGR03826 family flagellar region protein -
  AAYR28_RS16280 (AAYR28_16280) comFC 3154896..3155552 (-) 657 WP_251232415.1 ComF family protein Machinery gene
  AAYR28_RS16285 (AAYR28_16285) - 3155579..3155872 (-) 294 WP_024423623.1 competence protein ComFB -
  AAYR28_RS16290 (AAYR28_16290) comFA 3155921..3157318 (-) 1398 WP_142925562.1 DEAD/DEAH box helicase Machinery gene
  AAYR28_RS16295 (AAYR28_16295) - 3157439..3158281 (-) 843 WP_024423625.1 DegV family protein -
  AAYR28_RS16300 (AAYR28_16300) degU 3158497..3159186 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAYR28_RS16305 (AAYR28_16305) degS 3159251..3160426 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAYR28_RS16310 (AAYR28_16310) - 3160647..3161315 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52917.79 Da        Isoelectric Point: 9.8335

>NTDB_id=995210 AAYR28_RS16290 WP_142925562.1 3155921..3157318(-) (comFA) [Bacillus safensis strain FUA2117]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAMKVPLRFHEHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=995210 AAYR28_RS16290 WP_142925562.1 3155921..3157318(-) (comFA) [Bacillus safensis strain FUA2117]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATGAAAGTTCCTTTGCGTTTTCACGAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAACTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.974

98.065

0.51

Multiple sequence alignment