Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMG27_RS12135 Genome accession   NZ_AP027058
Coordinates   2530818..2531309 (-) Length   163 a.a.
NCBI ID   WP_281811672.1    Uniprot ID   -
Organism   Limnohabitans sp. MORI2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2525818..2536309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG27_RS12110 (LMORI2_23590) - 2526227..2526985 (-) 759 WP_281811662.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  QMG27_RS12115 (LMORI2_23600) - 2526982..2528670 (-) 1689 WP_281811664.1 long-chain-fatty-acid--CoA ligase -
  QMG27_RS12120 (LMORI2_23610) - 2528773..2529273 (+) 501 WP_281811666.1 NUDIX hydrolase -
  QMG27_RS12125 (LMORI2_23620) mnmA 2529281..2530408 (+) 1128 WP_281811668.1 tRNA 2-thiouridine(34) synthase MnmA -
  QMG27_RS12130 (LMORI2_23630) - 2530439..2530684 (-) 246 WP_281811670.1 hypothetical protein -
  QMG27_RS12135 (LMORI2_23640) ssb 2530818..2531309 (-) 492 WP_281811672.1 single-stranded DNA-binding protein Machinery gene
  QMG27_RS12140 (LMORI2_23650) - 2531337..2532524 (-) 1188 WP_281814661.1 MFS transporter -
  QMG27_RS12145 (LMORI2_23660) - 2532637..2532861 (-) 225 WP_281811674.1 BrnA antitoxin family protein -
  QMG27_RS12150 (LMORI2_23670) - 2532863..2533144 (-) 282 WP_281811676.1 BrnT family toxin -
  QMG27_RS12155 (LMORI2_23680) - 2533192..2533893 (-) 702 WP_281811678.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17331.41 Da        Isoelectric Point: 5.9490

>NTDB_id=99451 QMG27_RS12135 WP_281811672.1 2530818..2531309(-) (ssb) [Limnohabitans sp. MORI2]
MASVNKVILVGNCGRDPEVRYLPSGQAVANVSVATSSRRKDKNSGEMIEDTQWHRVTFYDRLAEIAGEYVKKGRPIYVEG
RLKYGVYTDKTTGVEKNTVDIIATELQLLGGREGMGGPSGGGDEGGYSRPAAPRAAAAPAAQRPAAPAPAKGGFDDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=99451 QMG27_RS12135 WP_281811672.1 2530818..2531309(-) (ssb) [Limnohabitans sp. MORI2]
ATGGCATCCGTTAACAAAGTCATCCTCGTCGGCAACTGCGGCCGCGACCCCGAAGTGCGCTACCTGCCCAGCGGCCAAGC
CGTGGCCAACGTGAGCGTGGCCACATCAAGCCGCCGCAAAGACAAAAACAGCGGCGAGATGATTGAAGACACACAGTGGC
ACCGCGTCACGTTCTATGACCGCTTGGCCGAAATCGCTGGCGAATACGTCAAAAAAGGCCGTCCCATTTACGTGGAAGGC
CGCCTGAAATACGGCGTGTACACCGACAAAACCACAGGCGTGGAAAAAAACACCGTGGACATCATTGCCACTGAATTGCA
ACTCTTGGGCGGCCGTGAAGGCATGGGCGGCCCCAGCGGTGGTGGTGACGAAGGCGGCTACAGCCGCCCAGCAGCACCTC
GTGCTGCTGCAGCGCCAGCAGCGCAACGCCCCGCAGCGCCTGCGCCAGCCAAAGGCGGCTTTGATGACATGGATGATGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

48.295

100

0.521
  ssb Neisseria gonorrhoeae MS11

48

100

0.515
  ssb Vibrio cholerae strain A1552

43.407

100

0.485
  ssb Glaesserella parasuis strain SC1401

43.169

100

0.485

Multiple sequence alignment