Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   AAYT23_RS09260 Genome accession   NZ_CP154877
Coordinates   1792615..1793028 (-) Length   137 a.a.
NCBI ID   WP_000265620.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234295     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1787615..1798028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT23_RS09230 (AAYT23_09215) - 1788310..1789134 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  AAYT23_RS09235 (AAYT23_09220) rnpA 1789109..1789480 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AAYT23_RS09240 (AAYT23_09225) - 1789497..1789628 (-) 132 WP_000768904.1 hypothetical protein -
  AAYT23_RS09245 (AAYT23_09230) - 1789629..1790819 (-) 1191 WP_000167753.1 acetate kinase -
  AAYT23_RS09250 (AAYT23_09235) comYH 1790870..1791823 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  AAYT23_RS09255 (AAYT23_09240) - 1791884..1792478 (-) 595 Protein_1795 class I SAM-dependent methyltransferase -
  AAYT23_RS09260 (AAYT23_09245) comGG/cglG 1792615..1793028 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAYT23_RS09265 (AAYT23_09250) comGF/cglF 1793006..1793467 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAYT23_RS09270 (AAYT23_09255) comGE/cglE 1793430..1793732 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAYT23_RS09275 (AAYT23_09260) comGD/cglD 1793695..1794099 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAYT23_RS09280 (AAYT23_09265) comGC/cglC 1794092..1794418 (-) 327 WP_000738631.1 comG operon protein ComGC Machinery gene
  AAYT23_RS09285 (AAYT23_09270) comGB/cglB 1794420..1795436 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAYT23_RS09290 (AAYT23_09275) comGA/cglA/cilD 1795384..1796325 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  AAYT23_RS09295 (AAYT23_09280) - 1796401..1796766 (-) 366 WP_000286415.1 DUF1033 family protein -
  AAYT23_RS09300 (AAYT23_09285) - 1796917..1797975 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15888.33 Da        Isoelectric Point: 10.2476

>NTDB_id=994480 AAYT23_RS09260 WP_000265620.1 1792615..1793028(-) (comGG/cglG) [Streptococcus pneumoniae strain 20234295]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEIATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=994480 AAYT23_RS09260 WP_000265620.1 1792615..1793028(-) (comGG/cglG) [Streptococcus pneumoniae strain 20234295]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCAATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGATAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comGG/cglG Streptococcus mitis SK321

85.95

88.321

0.759


Multiple sequence alignment