Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EW023_RS09295 Genome accession   NZ_LR130239
Coordinates   1834603..1835199 (-) Length   198 a.a.
NCBI ID   WP_023612588.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PS003 isolate PS003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829603..1840199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW023_RS09260 - 1829662..1829967 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  EW023_RS09265 ruvX 1829979..1830398 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  EW023_RS09270 - 1830395..1830664 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  EW023_RS09275 spx 1830779..1831177 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  EW023_RS09280 recA 1831468..1832604 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  EW023_RS09285 cinA 1832693..1833964 (-) 1272 WP_050336413.1 competence/damage-inducible protein A Machinery gene
  EW023_RS09290 - 1834033..1834593 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  EW023_RS09295 ruvA 1834603..1835199 (-) 597 WP_023612588.1 Holliday junction branch migration protein RuvA Machinery gene
  EW023_RS09300 - 1835201..1836421 (-) 1221 WP_002992187.1 MDR family MFS transporter -
  EW023_RS09305 hexB 1836432..1838414 (-) 1983 WP_023612567.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=994462 EW023_RS09295 WP_023612588.1 1834603..1835199(-) (ruvA) [Streptococcus pyogenes strain PS003 isolate PS003]
MYDYIKGQLTKLTAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=994462 EW023_RS09295 WP_023612588.1 1834603..1835199(-) (ruvA) [Streptococcus pyogenes strain PS003 isolate PS003]
ATGTACGATTATATTAAAGGTCAATTGACCAAACTTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGATGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment