Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AAYT23_RS08280 Genome accession   NZ_CP154877
Coordinates   1628533..1629243 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain 20234295     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623533..1634243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT23_RS08265 (AAYT23_08250) - 1624074..1624322 (-) 249 WP_000364990.1 YneF family protein -
  AAYT23_RS08270 (AAYT23_08255) treC 1624578..1626203 (-) 1626 WP_000171224.1 alpha,alpha-phosphotrehalase -
  AAYT23_RS08275 (AAYT23_08260) treP 1626381..1628348 (-) 1968 WP_000514299.1 PTS system trehalose-specific EIIBC component -
  AAYT23_RS08280 (AAYT23_08265) treR 1628533..1629243 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AAYT23_RS08285 (AAYT23_08270) - 1629275..1630078 (-) 804 WP_000157673.1 ABC transporter ATP-binding protein -
  AAYT23_RS08290 (AAYT23_08275) - 1630091..1630968 (-) 878 Protein_1639 ABC transporter permease -
  AAYT23_RS08295 (AAYT23_08280) - 1630980..1631789 (-) 810 Protein_1640 ABC transporter substrate-binding protein -
  AAYT23_RS08300 (AAYT23_08285) amiF 1632406..1633332 (-) 927 WP_001291297.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=994462 AAYT23_RS08280 WP_000760673.1 1628533..1629243(+) (treR) [Streptococcus pneumoniae strain 20234295]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=994462 AAYT23_RS08280 WP_000760673.1 1628533..1629243(+) (treR) [Streptococcus pneumoniae strain 20234295]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment