Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAG092_RS07485 | Genome accession | NZ_CP154874 |
| Coordinates | 1542685..1543557 (+) | Length | 290 a.a. |
| NCBI ID | WP_373389178.1 | Uniprot ID | - |
| Organism | Pseudomonas alcaligenes strain Med1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1537685..1548557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAG092_RS07460 (AAG092_07410) | - | 1537992..1538789 (-) | 798 | WP_110680825.1 | ABC transporter permease subunit | - |
| AAG092_RS07465 (AAG092_07415) | - | 1538861..1539301 (-) | 441 | WP_110680824.1 | hypothetical protein | - |
| AAG092_RS07470 (AAG092_07420) | pilA | 1539321..1539503 (-) | 183 | WP_110680823.1 | type IV pilin protein | Machinery gene |
| AAG092_RS07475 (AAG092_07425) | pilB | 1539749..1541455 (+) | 1707 | WP_373389568.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAG092_RS07480 (AAG092_07430) | pilC | 1541462..1542685 (+) | 1224 | WP_110680822.1 | type II secretion system F family protein | Machinery gene |
| AAG092_RS07485 (AAG092_07435) | pilD | 1542685..1543557 (+) | 873 | WP_373389178.1 | A24 family peptidase | Machinery gene |
| AAG092_RS07490 (AAG092_07440) | coaE | 1543554..1544165 (+) | 612 | WP_373389179.1 | dephospho-CoA kinase | - |
| AAG092_RS07495 (AAG092_07445) | yacG | 1544162..1544356 (+) | 195 | WP_110680819.1 | DNA gyrase inhibitor YacG | - |
| AAG092_RS07500 (AAG092_07450) | - | 1544360..1544575 (-) | 216 | WP_373389180.1 | hypothetical protein | - |
| AAG092_RS07505 (AAG092_07455) | - | 1544681..1545367 (-) | 687 | WP_373389181.1 | energy-coupling factor ABC transporter permease | - |
| AAG092_RS07510 (AAG092_07460) | - | 1545364..1545789 (-) | 426 | WP_373389182.1 | GNAT family N-acetyltransferase | - |
| AAG092_RS07515 (AAG092_07465) | - | 1545862..1546488 (+) | 627 | WP_373389183.1 | DUF1780 domain-containing protein | - |
| AAG092_RS07520 (AAG092_07470) | - | 1546485..1546967 (+) | 483 | WP_373389184.1 | MOSC domain-containing protein | - |
| AAG092_RS07525 (AAG092_07475) | - | 1547011..1547184 (+) | 174 | WP_061905382.1 | DUF3094 domain-containing protein | - |
| AAG092_RS07530 (AAG092_07480) | - | 1547245..1548540 (+) | 1296 | WP_373389185.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31820.73 Da Isoelectric Point: 6.9209
>NTDB_id=994321 AAG092_RS07485 WP_373389178.1 1542685..1543557(+) (pilD) [Pseudomonas alcaligenes strain Med1]
MSLPSFLAGNLPAFVLSVTLLGLIIGSFLNVVIYRLPVMMQRDWRQQAREILELPEEPAQGTFNLLLPNSCCPHCGHQIR
AWENIPLLSYLALRGKCAGCKAPISPRYPLVELACGLLSGYVAFHYGFGWQAAGVLVLTWGLLAMSLIDCDHQLLPDSLV
LPLLWLGLIANHFGLFASLEDALWGAIGGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVMLLRLRNQETSTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK
MSLPSFLAGNLPAFVLSVTLLGLIIGSFLNVVIYRLPVMMQRDWRQQAREILELPEEPAQGTFNLLLPNSCCPHCGHQIR
AWENIPLLSYLALRGKCAGCKAPISPRYPLVELACGLLSGYVAFHYGFGWQAAGVLVLTWGLLAMSLIDCDHQLLPDSLV
LPLLWLGLIANHFGLFASLEDALWGAIGGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVMLLRLRNQETSTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=994321 AAG092_RS07485 WP_373389178.1 1542685..1543557(+) (pilD) [Pseudomonas alcaligenes strain Med1]
ATGTCGCTACCTTCCTTCCTGGCCGGCAATCTGCCGGCCTTTGTTTTATCCGTCACCCTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGGTGATCTATCGCCTGCCGGTGATGATGCAGCGCGATTGGCGCCAGCAGGCGCGCGAGATCCTGGAAC
TGCCGGAAGAGCCGGCGCAGGGCACCTTCAACCTGCTCCTGCCGAACTCCTGCTGCCCCCACTGCGGCCACCAGATCCGC
GCCTGGGAGAACATCCCGCTGCTCAGCTACCTGGCACTGCGCGGCAAGTGCGCAGGCTGCAAGGCGCCGATTAGCCCGCG
CTACCCGCTGGTCGAGCTGGCCTGCGGGCTGCTGTCCGGCTATGTCGCCTTCCACTACGGTTTCGGCTGGCAGGCGGCCG
GGGTGCTGGTGCTGACCTGGGGCCTGTTGGCGATGAGCCTGATCGACTGCGATCACCAGCTGCTGCCGGACTCCCTGGTG
CTGCCGCTGCTCTGGCTGGGGCTGATCGCCAACCACTTCGGCCTGTTCGCCAGCCTGGAAGACGCCCTGTGGGGTGCCAT
CGGCGGTTATCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGGGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGC
GCCGTGCTCGGGGTGATGCTGCTGCGCCTGCGCAACCAGGAGACCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
CGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA
ATGTCGCTACCTTCCTTCCTGGCCGGCAATCTGCCGGCCTTTGTTTTATCCGTCACCCTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGGTGATCTATCGCCTGCCGGTGATGATGCAGCGCGATTGGCGCCAGCAGGCGCGCGAGATCCTGGAAC
TGCCGGAAGAGCCGGCGCAGGGCACCTTCAACCTGCTCCTGCCGAACTCCTGCTGCCCCCACTGCGGCCACCAGATCCGC
GCCTGGGAGAACATCCCGCTGCTCAGCTACCTGGCACTGCGCGGCAAGTGCGCAGGCTGCAAGGCGCCGATTAGCCCGCG
CTACCCGCTGGTCGAGCTGGCCTGCGGGCTGCTGTCCGGCTATGTCGCCTTCCACTACGGTTTCGGCTGGCAGGCGGCCG
GGGTGCTGGTGCTGACCTGGGGCCTGTTGGCGATGAGCCTGATCGACTGCGATCACCAGCTGCTGCCGGACTCCCTGGTG
CTGCCGCTGCTCTGGCTGGGGCTGATCGCCAACCACTTCGGCCTGTTCGCCAGCCTGGAAGACGCCCTGTGGGGTGCCAT
CGGCGGTTATCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGGGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGC
GCCGTGCTCGGGGTGATGCTGCTGCGCCTGCGCAACCAGGAGACCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
CGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.569 |
94.483 |
0.534 |
| pilD | Acinetobacter nosocomialis M2 |
53.901 |
97.241 |
0.524 |
| pilD | Acinetobacter baumannii D1279779 |
53.546 |
97.241 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
54.945 |
94.138 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
51.724 |
90 |
0.466 |