Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAG895_RS04850 Genome accession   NZ_CP154859
Coordinates   1092342..1092815 (+) Length   157 a.a.
NCBI ID   WP_345794408.1    Uniprot ID   -
Organism   Thauera sp. JM12B12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1087342..1097815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG895_RS04840 (AAG895_04840) uvrA 1088130..1090967 (-) 2838 WP_345794406.1 excinuclease ABC subunit UvrA -
  AAG895_RS04845 (AAG895_04845) - 1091087..1092268 (+) 1182 WP_345794407.1 MFS transporter -
  AAG895_RS04850 (AAG895_04850) ssb 1092342..1092815 (+) 474 WP_345794408.1 single-stranded DNA-binding protein Machinery gene
  AAG895_RS04855 (AAG895_04855) - 1092907..1093872 (+) 966 WP_345794409.1 MBL fold metallo-hydrolase -
  AAG895_RS04860 (AAG895_04860) - 1093881..1094699 (+) 819 WP_345794410.1 tRNA threonylcarbamoyladenosine dehydratase -
  AAG895_RS04865 (AAG895_04865) - 1094699..1095085 (+) 387 WP_345794411.1 CbiX/SirB N-terminal domain-containing protein -
  AAG895_RS04870 (AAG895_04870) - 1095160..1096242 (+) 1083 WP_345794412.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17365.18 Da        Isoelectric Point: 5.3255

>NTDB_id=994148 AAG895_RS04850 WP_345794408.1 1092342..1092815(+) (ssb) [Thauera sp. JM12B12]
MASLNKVILIGNLGADPESRFAPSGDAICNIRLATTETWRDKNTGERREATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQSGQDRYTTEIRADEMKMLGRREGGDAPMRSNEGGGGWDAPAAAPQRPQSQPAPQSGGFGDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=994148 AAG895_RS04850 WP_345794408.1 1092342..1092815(+) (ssb) [Thauera sp. JM12B12]
ATGGCATCCCTCAATAAAGTCATCCTGATCGGCAACCTCGGCGCCGATCCGGAAAGCCGCTTCGCTCCCTCGGGCGACGC
AATCTGCAACATCCGCCTGGCCACCACCGAGACCTGGCGCGACAAGAACACCGGCGAGCGCCGCGAAGCCACCGAGTGGC
ACCGCGTGTCCTTCTACGGCAAGCTCGCCGAGATCGCCGGACAATACCTGCGCAAGGGCAGCCAGGTGTACATCGAGGGC
AGCCTGCGCACCCGGAAATGGCAGGACCAGAGCGGCCAGGACCGCTACACCACCGAGATCCGCGCCGACGAGATGAAGAT
GCTCGGCCGCCGCGAGGGGGGCGATGCGCCGATGCGCAGCAACGAGGGTGGCGGTGGATGGGACGCCCCGGCTGCCGCGC
CGCAACGGCCGCAGTCGCAGCCCGCCCCGCAGTCGGGCGGCTTCGGCGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.662
  ssb Glaesserella parasuis strain SC1401

51.381

100

0.592
  ssb Neisseria meningitidis MC58

48.851

100

0.541
  ssb Neisseria gonorrhoeae MS11

48.276

100

0.535

Multiple sequence alignment