Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | AAIA72_RS13565 | Genome accession | NZ_CP154858 |
| Coordinates | 2805200..2806327 (+) | Length | 375 a.a. |
| NCBI ID | WP_369600838.1 | Uniprot ID | A0AB39UTZ4 |
| Organism | Hahella sp. SMD15-11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2800200..2811327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAIA72_RS13540 (AAIA72_13505) | - | 2801550..2801846 (-) | 297 | WP_369600833.1 | DUF167 family protein | - |
| AAIA72_RS13545 (AAIA72_13510) | - | 2801856..2802416 (-) | 561 | WP_369600834.1 | YggT family protein | - |
| AAIA72_RS13550 (AAIA72_13515) | proC | 2802488..2803327 (-) | 840 | WP_369600835.1 | pyrroline-5-carboxylate reductase | - |
| AAIA72_RS13555 (AAIA72_13520) | - | 2803324..2804034 (-) | 711 | WP_369600836.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| AAIA72_RS13560 (AAIA72_13525) | pilT | 2804139..2805173 (+) | 1035 | WP_369600837.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AAIA72_RS13565 (AAIA72_13530) | pilU | 2805200..2806327 (+) | 1128 | WP_369600838.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| AAIA72_RS13570 (AAIA72_13535) | - | 2806367..2806903 (-) | 537 | WP_369600839.1 | hypothetical protein | - |
| AAIA72_RS13575 (AAIA72_13540) | - | 2807017..2807709 (+) | 693 | WP_369600840.1 | GntR family transcriptional regulator | - |
| AAIA72_RS13580 (AAIA72_13545) | - | 2807808..2808080 (+) | 273 | WP_369600841.1 | hypothetical protein | - |
| AAIA72_RS13585 (AAIA72_13550) | - | 2808083..2808355 (-) | 273 | WP_369600842.1 | acyl-CoA-binding protein | - |
| AAIA72_RS13590 (AAIA72_13555) | - | 2808468..2809637 (-) | 1170 | WP_369600843.1 | translocation/assembly module TamB domain-containing protein | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41927.35 Da Isoelectric Point: 7.0998
>NTDB_id=994139 AAIA72_RS13565 WP_369600838.1 2805200..2806327(+) (pilU) [Hahella sp. SMD15-11]
MDFDKLLKIMVEKGASDLFITAGVPPSIKVHGRMLPVTKTPLSPEQTRETVFSIMTEKQKREFEDTHECNFAISARGIGR
FRVSAFYQRNLCGMVLRRIETNIPKIEDLGLPEVIKKLAMTKRGLIIFVGATGTGKSTSLAAMIGHRNRNSKGHIISIED
PIEYIHQHHGCIVTQREVGIDTESFEVALKNTLRQAPDVIMIGEVRTKETMEYAVTFAETGHLCLATLHANNANQALDRI
INFFPPEHHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVVEVLLNTPLAADIIRKGEVHKLKELMKKSTDQGMQTFDQA
LYMAYKAGEITYEDALAYADSANDLRLMIKLGVDTDSNKLNAQADNLRLSDDLDF
MDFDKLLKIMVEKGASDLFITAGVPPSIKVHGRMLPVTKTPLSPEQTRETVFSIMTEKQKREFEDTHECNFAISARGIGR
FRVSAFYQRNLCGMVLRRIETNIPKIEDLGLPEVIKKLAMTKRGLIIFVGATGTGKSTSLAAMIGHRNRNSKGHIISIED
PIEYIHQHHGCIVTQREVGIDTESFEVALKNTLRQAPDVIMIGEVRTKETMEYAVTFAETGHLCLATLHANNANQALDRI
INFFPPEHHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVVEVLLNTPLAADIIRKGEVHKLKELMKKSTDQGMQTFDQA
LYMAYKAGEITYEDALAYADSANDLRLMIKLGVDTDSNKLNAQADNLRLSDDLDF
Nucleotide
Download Length: 1128 bp
>NTDB_id=994139 AAIA72_RS13565 WP_369600838.1 2805200..2806327(+) (pilU) [Hahella sp. SMD15-11]
ATGGACTTTGACAAGCTGCTGAAAATCATGGTTGAAAAGGGGGCGTCAGACCTCTTCATCACGGCGGGCGTGCCGCCCAG
CATCAAGGTGCACGGGCGCATGCTGCCGGTGACCAAGACGCCGTTGTCACCGGAGCAGACACGCGAGACCGTGTTCTCCA
TCATGACGGAAAAACAGAAACGCGAGTTCGAAGACACGCACGAGTGCAACTTTGCCATCAGTGCGCGCGGCATCGGCCGT
TTCCGGGTGAGCGCCTTCTATCAGCGCAACCTCTGCGGCATGGTGCTGCGGCGCATCGAGACCAACATTCCCAAGATCGA
GGACCTGGGCCTGCCGGAAGTCATCAAGAAGCTGGCCATGACCAAGCGGGGGCTCATCATCTTCGTGGGAGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCCATGATCGGCCACCGGAACCGGAACTCCAAGGGTCACATCATTTCCATCGAAGAC
CCCATCGAATACATTCACCAGCATCACGGCTGTATCGTGACCCAGCGCGAGGTGGGCATTGACACCGAGTCCTTCGAGGT
GGCGCTGAAGAATACCCTGCGTCAGGCACCGGACGTGATCATGATCGGTGAGGTGCGGACCAAGGAAACCATGGAGTACG
CAGTGACCTTTGCGGAAACCGGTCACCTCTGTCTGGCAACCCTGCACGCCAACAACGCCAACCAGGCACTGGACCGGATC
ATCAACTTCTTCCCGCCCGAGCATCACAATCAGGTGTGGATGGATCTGTCCCTGAACCTCAAGGCCATCGTGGCACAGCA
GCTGGTTCCGACGCCGGACGGCAAGGGCCGCCGGGCGGTGGTCGAGGTGCTGCTCAATACGCCGCTGGCGGCGGACATCA
TCCGCAAGGGCGAGGTGCACAAGCTCAAGGAGCTGATGAAAAAATCCACCGACCAAGGCATGCAGACCTTCGATCAGGCC
CTGTATATGGCCTACAAGGCCGGCGAGATCACCTACGAGGATGCGCTGGCCTATGCGGATTCGGCCAACGATCTGCGCCT
GATGATCAAGCTGGGTGTGGATACGGACTCCAACAAGCTCAATGCCCAGGCGGACAATCTGCGTCTGAGTGACGATCTGG
ATTTCTGA
ATGGACTTTGACAAGCTGCTGAAAATCATGGTTGAAAAGGGGGCGTCAGACCTCTTCATCACGGCGGGCGTGCCGCCCAG
CATCAAGGTGCACGGGCGCATGCTGCCGGTGACCAAGACGCCGTTGTCACCGGAGCAGACACGCGAGACCGTGTTCTCCA
TCATGACGGAAAAACAGAAACGCGAGTTCGAAGACACGCACGAGTGCAACTTTGCCATCAGTGCGCGCGGCATCGGCCGT
TTCCGGGTGAGCGCCTTCTATCAGCGCAACCTCTGCGGCATGGTGCTGCGGCGCATCGAGACCAACATTCCCAAGATCGA
GGACCTGGGCCTGCCGGAAGTCATCAAGAAGCTGGCCATGACCAAGCGGGGGCTCATCATCTTCGTGGGAGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCCATGATCGGCCACCGGAACCGGAACTCCAAGGGTCACATCATTTCCATCGAAGAC
CCCATCGAATACATTCACCAGCATCACGGCTGTATCGTGACCCAGCGCGAGGTGGGCATTGACACCGAGTCCTTCGAGGT
GGCGCTGAAGAATACCCTGCGTCAGGCACCGGACGTGATCATGATCGGTGAGGTGCGGACCAAGGAAACCATGGAGTACG
CAGTGACCTTTGCGGAAACCGGTCACCTCTGTCTGGCAACCCTGCACGCCAACAACGCCAACCAGGCACTGGACCGGATC
ATCAACTTCTTCCCGCCCGAGCATCACAATCAGGTGTGGATGGATCTGTCCCTGAACCTCAAGGCCATCGTGGCACAGCA
GCTGGTTCCGACGCCGGACGGCAAGGGCCGCCGGGCGGTGGTCGAGGTGCTGCTCAATACGCCGCTGGCGGCGGACATCA
TCCGCAAGGGCGAGGTGCACAAGCTCAAGGAGCTGATGAAAAAATCCACCGACCAAGGCATGCAGACCTTCGATCAGGCC
CTGTATATGGCCTACAAGGCCGGCGAGATCACCTACGAGGATGCGCTGGCCTATGCGGATTCGGCCAACGATCTGCGCCT
GATGATCAAGCTGGGTGTGGATACGGACTCCAACAAGCTCAATGCCCAGGCGGACAATCTGCGTCTGAGTGACGATCTGG
ATTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
80.481 |
99.733 |
0.803 |
| pilU | Acinetobacter baylyi ADP1 |
63.76 |
97.867 |
0.624 |
| pilU | Vibrio cholerae strain A1552 |
57.714 |
93.333 |
0.539 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.363 |
90.4 |
0.392 |