Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAIA72_RS13480 Genome accession   NZ_CP154858
Coordinates   2787306..2788835 (+) Length   509 a.a.
NCBI ID   WP_369600821.1    Uniprot ID   A0AB39UU53
Organism   Hahella sp. SMD15-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2782306..2793835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA72_RS13450 (AAIA72_13415) fabB 2782667..2783884 (+) 1218 WP_369600815.1 beta-ketoacyl-ACP synthase I -
  AAIA72_RS13455 (AAIA72_13420) - 2784076..2784639 (+) 564 WP_369600816.1 murein L,D-transpeptidase family protein -
  AAIA72_RS13460 (AAIA72_13425) - 2784640..2784891 (-) 252 WP_369600817.1 SemiSWEET transporter -
  AAIA72_RS13465 (AAIA72_13430) - 2785020..2786276 (-) 1257 WP_369600818.1 ammonium transporter -
  AAIA72_RS13470 (AAIA72_13435) glnK 2786338..2786676 (-) 339 WP_369600819.1 P-II family nitrogen regulator -
  AAIA72_RS13475 (AAIA72_13440) - 2786986..2787246 (+) 261 WP_369600820.1 accessory factor UbiK family protein -
  AAIA72_RS13480 (AAIA72_13445) comM 2787306..2788835 (+) 1530 WP_369600821.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAIA72_RS13485 (AAIA72_13450) - 2788844..2791351 (-) 2508 WP_369600822.1 YbcC family protein -
  AAIA72_RS13490 (AAIA72_13455) - 2791344..2792927 (-) 1584 WP_369600823.1 NADH-quinone oxidoreductase subunit L -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55490.84 Da        Isoelectric Point: 8.4831

>NTDB_id=994137 AAIA72_RS13480 WP_369600821.1 2787306..2788835(+) (comM) [Hahella sp. SMD15-11]
MSLAILYSRATQGMRAPLVAVETHLANGLPAFNIVGMPETAVRESKDRVRSAIQNAGFEFPARRITVNLAPADLPKEGGR
YDLAIALGILAASGQISADGLRTYEVYGELALGGQVRPVRGLLPSALQCHRVGRRMLLPVRSLSEVALVRELEAYPVTDL
RQAVEHLGGAVTLEPAEMIRPQQLRTGQVPDLADVRGQYQARRALEVAAAGGHHLLFFGPPGTGKTMLASRLPGILPPLT
EDEALEAAAIASIAGLDVRPDTFLQRRFRAPHHTATPAALVGGGSPPRPGEISLAHRGVLFLDELPEFDRKVLEVLREPL
ESGEIVITRARHQARFPAQFQLVAAMNPCPCGYAGHPDRACECTPQRIEQYRQKLSGPLLDRIDMHVEVPAVPAAALQDD
TPMEDSAAVRERVMAARQRQLVRQGYPNQWLEGRWLDTYCKPDNAAQRVLLLSMEKLGLSARAYHRILRVARTVADLAGS
ATIRDTHVLEAISLRALDRPVQGREVHSG

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=994137 AAIA72_RS13480 WP_369600821.1 2787306..2788835(+) (comM) [Hahella sp. SMD15-11]
ATGTCACTCGCCATTCTCTATTCCCGCGCCACGCAGGGCATGCGTGCGCCGCTGGTTGCAGTGGAAACCCATCTCGCCAA
CGGGCTGCCGGCCTTCAACATCGTCGGCATGCCGGAAACGGCCGTCCGCGAAAGCAAAGATCGCGTTCGCAGTGCGATTC
AGAACGCCGGATTCGAATTTCCCGCAAGGCGCATCACGGTCAATCTTGCTCCCGCCGATCTGCCCAAGGAAGGCGGGCGC
TATGACCTGGCCATCGCGCTGGGGATTCTGGCCGCCAGCGGCCAGATCAGTGCCGACGGTCTCAGAACCTATGAAGTCTA
CGGGGAGCTGGCGCTGGGCGGTCAGGTCCGGCCCGTTCGCGGCTTGCTGCCCAGCGCGCTCCAGTGTCACCGGGTGGGCC
GGCGGATGCTGCTGCCGGTCCGTTCCCTGTCGGAAGTGGCGCTGGTGCGGGAACTGGAAGCCTATCCGGTCACGGATCTG
AGACAGGCAGTGGAACATCTGGGCGGTGCGGTGACCCTTGAGCCGGCTGAAATGATCCGGCCGCAGCAGCTGCGCACCGG
GCAGGTGCCCGATCTGGCGGATGTGCGCGGCCAGTATCAGGCCCGCCGGGCGCTGGAAGTGGCGGCTGCCGGGGGGCATC
ACCTGCTGTTCTTTGGCCCGCCCGGAACCGGCAAGACCATGCTCGCCAGCCGTCTGCCCGGCATTCTGCCGCCGCTGACC
GAGGATGAGGCCCTGGAGGCCGCGGCCATTGCCTCCATTGCCGGCCTGGATGTGCGGCCGGACACCTTCCTGCAGCGTCG
TTTCCGGGCGCCTCACCATACGGCCACACCCGCCGCCCTGGTGGGCGGTGGCAGTCCGCCGCGACCGGGCGAGATTTCCC
TGGCCCACCGGGGCGTGCTCTTTCTCGACGAGTTGCCCGAGTTTGACCGCAAGGTGCTGGAGGTATTGCGAGAGCCGCTG
GAATCCGGGGAGATTGTCATTACCCGGGCCCGGCATCAGGCCCGCTTCCCGGCCCAGTTCCAGCTGGTCGCAGCCATGAA
CCCCTGCCCCTGCGGGTATGCCGGCCATCCTGACCGGGCCTGCGAATGCACGCCGCAGCGCATCGAGCAGTATCGTCAGA
AACTGTCCGGTCCGCTGCTCGACCGGATCGACATGCATGTGGAAGTCCCTGCCGTACCGGCCGCTGCGCTGCAGGATGAC
ACGCCCATGGAAGATTCCGCTGCGGTGCGTGAGCGGGTCATGGCGGCCAGACAGCGCCAGCTGGTCCGTCAGGGCTACCC
CAATCAGTGGCTCGAAGGGCGCTGGCTCGATACTTACTGCAAGCCCGACAACGCGGCCCAGCGGGTGCTGTTGCTCAGCA
TGGAAAAGCTTGGCCTCTCGGCGCGGGCCTATCACCGCATTCTGCGTGTGGCACGCACGGTGGCCGATCTGGCCGGATCC
GCGACGATCCGCGACACCCATGTGCTGGAAGCCATCAGCCTGCGTGCACTTGACCGGCCGGTGCAGGGCAGGGAAGTACA
CTCGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54

98.232

0.53
  comM Vibrio campbellii strain DS40M4

52.8

98.232

0.519
  comM Haemophilus influenzae Rd KW20

51.282

99.607

0.511
  comM Glaesserella parasuis strain SC1401

51.085

99.607

0.509
  comM Legionella pneumophila str. Paris

49.6

98.232

0.487
  comM Legionella pneumophila strain ERS1305867

49.6

98.232

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

99.804

0.452

Multiple sequence alignment