Detailed information NTG0099402

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: H346_RS0102800
• Genome accession: NZ_AUKZ01000006
• Coordinates: 82595..83602 (+)
• Length: 335 a.a.
• NCBI ID: WP_027969745.1
• Uniprot ID: -
• Organism: Streptococcus castoreus DSM 17536
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 77595..88602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H346_RS0102770	purK	77941..79023 (+)	1083	WP_027969740.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
H346_RS0102775	-	79034..79261 (+)	228	WP_027969741.1	hypothetical protein	-
H346_RS0102780	-	79258..80004 (+)	747	WP_027969742.1	hypothetical protein	-
H346_RS0102785	purB	80016..81308 (+)	1293	WP_027969743.1	adenylosuccinate lyase	-
H346_RS0102790	comR	81438..82349 (+)	912	WP_027969744.1	helix-turn-helix domain-containing protein	Regulator
H346_RS10710	comS	82440..82535 (+)	96	WP_208595719.1	quorum-sensing system DWW-type pheromone	Regulator
H346_RS0102800	ruvB	82595..83602 (+)	1008	WP_027969745.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
H346_RS0102805	-	83741..84178 (+)	438	WP_027969746.1	low molecular weight protein-tyrosine-phosphatase	-
H346_RS0102810	-	84203..84604 (+)	402	WP_027969747.1	MORN repeat-containing protein	-
H346_RS0102815	-	84601..86376 (+)	1776	WP_027969748.1	acyltransferase family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37818.41 Da
• Isoelectric Point: 4.7446

>NTDB_id=99402 H346_RS0102800 WP_027969745.1 82595..83602(+) (ruvB) [Streptococcus castoreus DSM 17536]
MARILDNDVMGDEEFVERTLRPQYLREYIGQDKVKEQLTIFIEAAKMRNESLDHVLLFGPPGLGKTTMAFVIANELRVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFGVEIVHKAAKELACRSRGTPRIANRLLKRVRDYAQIIGDGIIT
IQMTDKALTMLDVDHEGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRIATEK
AYRHLGYSYQDTTSY

Nucleotide

• Length: 1008 bp

>NTDB_id=99402 H346_RS0102800 WP_027969745.1 82595..83602(+) (ruvB) [Streptococcus castoreus DSM 17536]
ATGGCTAGAATTTTAGATAATGATGTGATGGGTGATGAGGAGTTTGTTGAACGGACTTTGCGCCCACAGTATTTACGAGA
ATATATTGGGCAGGATAAGGTTAAGGAACAATTAACCATTTTCATTGAAGCGGCTAAAATGCGGAATGAATCTTTGGACC
ATGTTTTGCTTTTTGGACCCCCTGGCTTGGGAAAAACGACAATGGCTTTTGTGATTGCCAATGAATTGAGGGTCAATTTA
AAACAAACATCGGGACCAGCTATTGAAAAAGCTGGAGACTTGGTAGCTATTTTAAATGACTTGGAGCCAGGAGATGTTTT
GTTTATTGATGAGATTCATCGACTGCCAATGGCTGTTGAAGAAGTTCTGTACAGTGCTATGGAAGACTTTTATATTGACA
TTATGATTGGTGCAGGGGATACAAGTCGTAGCATTCACTTGGATTTGCCTCCATTTACCCTGATTGGTGCGACAACACGA
GCAGGAATGCTATCAAATCCTCTACGAGCCCGATTTGGTATCACTGGTCACATGGAGTATTATCAGGTGGATGATTTGAC
AGAAATTGTTGAACGTACAGCTGATATTTTTGGTGTGGAAATCGTCCATAAAGCCGCTAAAGAACTTGCTTGTCGTAGTC
GAGGGACACCACGTATTGCCAATCGTTTGTTAAAACGTGTTCGAGATTATGCTCAAATTATTGGAGATGGTATTATTACC
ATTCAAATGACTGACAAGGCACTAACCATGTTGGATGTTGATCATGAAGGGCTCGACTATGTTGATCAAAAAATTCTTCG
TACCATGATTGAGATGTATCAAGGTGGACCGGTTGGACTGGGGACGTTGTCAGTCAATATTGCAGAGGAGCGGGATACGG
TCGAAGATATGTATGAACCTTATTTAATTCAAAAAGGGTTTCTTATGCGGACAAGGACAGGACGAATAGCAACAGAAAAA
GCTTACCGTCATTTAGGTTATTCTTATCAAGACACGACCTCGTATTAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	87.311	98.806	0.863
ruvB	Streptococcus pneumoniae R6	87.009	98.806	0.86
ruvB	Streptococcus pneumoniae D39	87.009	98.806	0.86
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.372	96.418	0.582
ruvB	Helicobacter pylori 26695	50.774	96.418	0.49
ruvB	Synechocystis sp. PCC 6803	51.429	94.03	0.484