Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QMG88_RS24600 Genome accession   NZ_AP027053
Coordinates   1333505..1334602 (-) Length   365 a.a.
NCBI ID   WP_281830613.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328505..1339602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS24585 (TUMSATVNIG3_48090) - 1328592..1329851 (+) 1260 WP_004408225.1 hydroxymethylglutaryl-CoA reductase -
  QMG88_RS24590 (TUMSATVNIG3_48100) - 1329926..1330573 (-) 648 WP_281830612.1 hypothetical protein -
  QMG88_RS24595 (TUMSATVNIG3_48110) - 1330877..1333486 (-) 2610 WP_004408228.1 LuxQ periplasmic sensor domain-containing protein -
  QMG88_RS24600 (TUMSATVNIG3_48120) luxP 1333505..1334602 (-) 1098 WP_281830613.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QMG88_RS24605 (TUMSATVNIG3_48130) - 1334768..1335400 (-) 633 WP_004408230.1 response regulator -
  QMG88_RS24610 (TUMSATVNIG3_48140) narQ 1335387..1337105 (-) 1719 WP_022611641.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  QMG88_RS24615 napF 1337306..1337797 (+) 492 WP_079655594.1 ferredoxin-type protein NapF -
  QMG88_RS24620 (TUMSATVNIG3_48150) - 1337800..1338102 (+) 303 WP_004408234.1 chaperone NapD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41192.68 Da        Isoelectric Point: 8.0026

>NTDB_id=99403 QMG88_RS24600 WP_281830613.1 1333505..1334602(-) (luxP) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MKLRHLLVGTISLALTSSLNAAQVLNGYWEYSDFLKTFPEQQSLVRNFSDVVRSEPVPLKVKQRKPVTISVIYPGEQVSD
YWRRNIKAFSKRMDELGIEYKINKVFTRPNVDIRQQSASLMEAIRNKSGYLIFTLDTGRHRKFIEHVLNSPDTKLILQNI
TTPLKAWEQNQPFMYVGFDHATGSRALASHFKSRFPRGANYSVLFFSQGYISAARGDTFIDAMSSEGENYQLRSSFYTKA
SRESGYQAAKNAIQKGDNLAFMYACSTDVALGATDAIKELGRNDIIINGWGGGSAELEAIQKGELDVTIMRMNDDTGVAM
AEAIKMDLEDKTVPTVYSGDFEIVTSQDSEERIQELKLRAFRYSD

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=99403 QMG88_RS24600 WP_281830613.1 1333505..1334602(-) (luxP) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGAAATTGCGACATCTTTTGGTTGGCACCATCAGTTTGGCTTTAACGTCGAGCTTAAACGCAGCACAAGTTCTCAACGG
GTATTGGGAATACAGTGATTTCCTTAAAACCTTTCCAGAGCAGCAGTCACTGGTCAGAAACTTTAGTGATGTTGTTCGCT
CAGAGCCCGTCCCACTTAAGGTAAAACAGAGAAAACCTGTCACGATCTCGGTTATCTATCCGGGTGAGCAGGTGTCTGAT
TACTGGCGCAGAAACATCAAAGCATTCAGCAAAAGAATGGATGAACTGGGCATTGAGTATAAAATTAACAAAGTTTTTAC
TCGCCCGAATGTAGACATTCGTCAGCAAAGTGCTTCTTTGATGGAAGCCATCCGTAACAAGTCAGGCTATCTGATCTTCA
CGTTAGATACAGGTCGACACAGAAAATTCATCGAACACGTTCTCAATAGCCCAGATACCAAACTCATACTGCAAAACATC
ACCACACCGCTTAAAGCGTGGGAACAGAACCAACCCTTTATGTATGTTGGCTTTGACCATGCCACAGGAAGTCGCGCTCT
TGCCAGCCATTTTAAATCTCGTTTTCCGCGAGGCGCAAACTACTCAGTACTCTTCTTTTCTCAGGGCTACATCAGTGCTG
CACGTGGCGATACTTTCATCGATGCCATGAGTAGCGAAGGGGAAAACTACCAACTTCGTTCATCTTTCTACACCAAGGCG
AGCCGAGAAAGTGGCTATCAGGCCGCAAAAAATGCGATTCAAAAAGGCGACAATTTAGCCTTCATGTACGCGTGTTCGAC
TGACGTGGCATTGGGTGCGACTGATGCGATTAAAGAACTTGGTAGAAATGACATAATTATCAACGGCTGGGGTGGTGGAA
GCGCTGAATTAGAAGCGATACAAAAAGGTGAATTGGATGTTACCATTATGAGAATGAACGATGATACAGGCGTTGCGATG
GCAGAGGCCATCAAAATGGATCTTGAAGACAAGACCGTACCTACCGTTTATTCCGGTGATTTTGAAATTGTCACCAGTCA
GGACAGTGAAGAAAGAATACAAGAGCTAAAATTACGTGCTTTCAGATATTCTGATTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.773

96.438

0.625

Multiple sequence alignment