Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMG88_RS18355 Genome accession   NZ_AP027052
Coordinates   3998701..4000224 (-) Length   507 a.a.
NCBI ID   WP_281828058.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3993701..4005224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS18335 (TUMSATVNIG3_35530) - 3994901..3995887 (+) 987 WP_281828054.1 serine/threonine protein kinase -
  QMG88_RS18340 (TUMSATVNIG3_35540) - 3995915..3996517 (+) 603 WP_004406510.1 thiol:disulfide interchange protein DsbA/DsbL -
  QMG88_RS18345 (TUMSATVNIG3_35550) - 3996587..3997471 (-) 885 WP_281828055.1 acyltransferase -
  QMG88_RS18350 (TUMSATVNIG3_35560) - 3997683..3998657 (+) 975 WP_281828056.1 DUF2860 family protein -
  QMG88_RS18355 (TUMSATVNIG3_35570) comM 3998701..4000224 (-) 1524 WP_281828058.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QMG88_RS18360 (TUMSATVNIG3_35580) ilvG 4000680..4002326 (+) 1647 WP_281828059.1 acetolactate synthase 2 catalytic subunit -
  QMG88_RS18365 (TUMSATVNIG3_35590) ilvM 4002326..4002610 (+) 285 WP_004406520.1 acetolactate synthase 2 small subunit -
  QMG88_RS18370 (TUMSATVNIG3_35600) ilvE 4002626..4003573 (+) 948 WP_004406522.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54863.96 Da        Isoelectric Point: 7.2979

>NTDB_id=99398 QMG88_RS18355 WP_281828058.1 3998701..4000224(-) (comM) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MALAIIHSRACVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQVAITKLGQTEFIGELALSGELRSVKGVLPAALAANRENHCLVVPDANGDQAALVGADVHKSAANL
LDVCADLCGQKTLGLFQTPELHFAKESSRCLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPDMSE
DEAMESASVASLTQQEINQYNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQTILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTQVVKQRVNFAREKMQARSGKVNALLGTREIDKYCPLHKQDAEFLENALHQLGLSIRAYHRIIKVARTIADLSGSPQ
IERPHIAEALGYRAMDRLMKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=99398 QMG88_RS18355 WP_281828058.1 3998701..4000224(-) (comM) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGGCGTTAGCGATCATTCATAGCCGGGCGTGTGTAGGAGTGGAAGCTCCAGAAGTGACGGTTGAGGTTCACATTAGCAA
CGGAATGCCAGGGTTTACGTTGGTAGGATTACCAGAAACTACTGTGAAAGAATCCCGAGATCGGGTTCGCAGTGCGATTA
TTAATTCAGGCTTTGAGTTTCCAGCCAAGCGAATTACGGTCAATCTGGCTCCCGCTGATTTACCGAAAGAAGGTGGAAGG
TTTGATTTACCCATAGCGCTGGGTATTTTGGCGGCATCAGAGCAAGTTGCCATTACCAAACTAGGTCAGACCGAGTTTAT
TGGTGAACTGGCTCTTTCGGGTGAGCTTCGGTCTGTCAAAGGCGTGTTACCAGCGGCGTTAGCCGCAAACCGGGAAAATC
ATTGCTTGGTTGTGCCCGATGCCAATGGTGATCAGGCAGCGCTTGTAGGGGCGGATGTTCACAAATCGGCAGCCAATTTA
CTCGATGTGTGCGCTGATTTGTGTGGGCAGAAAACACTGGGATTATTTCAAACCCCAGAACTTCATTTTGCAAAGGAATC
ATCACGATGCCTGCAAGATATCATTGGTCAGCAGCAAGGTAAGCGAGCACTAGAAATTGCCGCTGCGGGTAATCACAATT
TGCTTTTTCTTGGACCACCCGGCACGGGGAAAACCATGTTGGCGTCGCGACTGTGCGATTTGCTGCCCGACATGAGCGAA
GATGAGGCAATGGAAAGCGCTTCGGTTGCTTCTCTCACCCAACAAGAGATAAATCAGTACAACTGGAAGAAGCGTCCATT
CCGTTCCCCACATCATTCGAGTTCTATGGCAGCACTGGTTGGCGGTGGATCGATTCCCCGTCCTGGTGAAATATCTTTAG
CTCATAACGGTTTGTTATTTTTAGATGAGATGCCGGAGTTTGAACGAAAGGTTCTGGATTCACTCAGAGAACCACTGGAA
TCCGGTGAAATCATTATTTCTCGCGCCGCGGGGAAAACCCGTTTTCCTGCCCGATTCCAGTTAGTTGGGGCATTGAACCC
TAGCCCTACGGGGTACTATGAGGGGAATCAGGCTCGAGTGAACCCTCAGACGATCCTGCGGTATTTGGGGCGACTATCAG
GGCCTTTACTTGATCGCTTTGATATGTCACTGGAAATACCGGCACTACCGAAAGGTACGTTATCAGAAGGTGGCGATCGC
GGAGAGCCGACTCAGGTGGTGAAACAGAGGGTCAACTTTGCCCGAGAGAAAATGCAGGCTCGCAGTGGAAAAGTGAATGC
GCTACTGGGTACACGTGAAATCGACAAATACTGTCCTTTGCACAAGCAAGATGCAGAGTTTCTGGAGAACGCATTGCACC
AACTCGGGTTATCCATACGCGCTTATCATCGAATCATCAAAGTGGCACGTACCATTGCAGATTTGTCAGGAAGCCCTCAA
ATCGAGCGGCCACATATTGCTGAAGCGTTGGGTTATCGAGCGATGGACAGATTAATGAAGCAACTGACGGCTCAGGCGGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

63.314

100

0.633
  comM Glaesserella parasuis strain SC1401

62.941

100

0.633
  comM Legionella pneumophila str. Paris

49.698

98.028

0.487
  comM Legionella pneumophila strain ERS1305867

49.698

98.028

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.434

Multiple sequence alignment