Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAEQ75_RS11120 Genome accession   NZ_CP154631
Coordinates   2336097..2338187 (+) Length   696 a.a.
NCBI ID   WP_343352368.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain I4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331097..2343187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEQ75_RS11100 (AAEQ75_11100) pilM 2333259..2334323 (+) 1065 WP_017678539.1 pilus assembly protein PilM Machinery gene
  AAEQ75_RS11105 (AAEQ75_11105) - 2334323..2334898 (+) 576 WP_143504517.1 PilN domain-containing protein -
  AAEQ75_RS11110 (AAEQ75_11110) pilO 2334895..2335521 (+) 627 WP_143504516.1 type 4a pilus biogenesis protein PilO -
  AAEQ75_RS11115 (AAEQ75_11115) pilP 2335518..2336042 (+) 525 WP_143504515.1 type 4a pilus biogenesis lipoprotein PilP -
  AAEQ75_RS11120 (AAEQ75_11120) pilQ 2336097..2338187 (+) 2091 WP_343352368.1 type IV pilus secretin PilQ Machinery gene
  AAEQ75_RS11125 (AAEQ75_11125) aroK 2338193..2338711 (+) 519 WP_343348699.1 shikimate kinase AroK -
  AAEQ75_RS11130 (AAEQ75_11130) aroB 2338763..2339866 (+) 1104 WP_343348701.1 3-dehydroquinate synthase -
  AAEQ75_RS11135 (AAEQ75_11135) - 2339877..2341415 (+) 1539 WP_343348703.1 AAA family ATPase -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 74962.11 Da        Isoelectric Point: 4.7484

>NTDB_id=993857 AAEQ75_RS11120 WP_343352368.1 2336097..2338187(+) (pilQ) [Pseudomonas sediminis strain I4]
MNNSFSRLGLSVAALLMSPALLAASLNSVDVAALPGDRVELKLTFDEPIAAPRGYTIEQPARIALDLPGVSNRLGSKNRE
IGMGNARSLTVVEAKDRTRLIVNLTNLTPYTTRVDGNNLFVVVGDGPVSAVSTPAVASPVAVAPAPAARAVAGVRAVSDI
DFQRGEQGEGNIVISLSDPKISPDVQEQGGNIRIDFPKTQLPESLRVRLDVKDFATPVQFVNASASADRASIVVEPTGLY
DYLVFQADNKLTISVKPLTEEDAVRRNADRFTYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVRGNITLRLQNVP
WDQALDLVLKTKGLDQRKVGNVLMVAPADEIAAREQQELAVQKQVAELAPLRKDIIQLNYAKASDIAKLYEEGSSGTLKD
DMRGSVIFDDRTNNLIVTLTQERIDELRRIVTQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGNLSSGNWSARGKNGNL
TLGEETDGVQQIDIPFNTPFVDLGASGSTSGIGIGFITNNTVLDLQLSAMEKSGSGEVVSQPKVVTSDKETAKILKGTEV
PYQEASSSGATSTSFKEAALSLEVTPQITPDNRVLMEVKVTKDAPDFSVASSTGGIPAISKNEVNAKVLVADGETIVIGG
VYSNTQSKSVDKVPFLGDLPFIGRVFKRDLVQDRKAELLVFLTPRIMNNQAIAVNR

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=993857 AAEQ75_RS11120 WP_343352368.1 2336097..2338187(+) (pilQ) [Pseudomonas sediminis strain I4]
ATGAACAACTCGTTCTCGCGGCTCGGCCTTTCTGTTGCGGCTCTCTTAATGTCGCCAGCGCTGCTGGCTGCAAGCCTGAA
CAGTGTGGATGTCGCCGCTCTGCCAGGGGATCGTGTCGAGCTGAAGCTGACTTTCGATGAGCCTATTGCAGCGCCTCGCG
GCTACACCATCGAGCAGCCCGCGCGTATTGCCCTTGATTTACCCGGTGTTTCCAATCGTCTGGGTAGCAAAAATCGCGAA
ATTGGAATGGGTAACGCACGTAGCCTGACTGTTGTCGAGGCCAAGGATCGTACGCGTTTGATTGTCAATCTGACCAATCT
CACGCCTTATACCACTCGCGTCGATGGCAACAACCTGTTTGTCGTCGTGGGTGATGGTCCGGTATCTGCTGTTTCGACTC
CGGCAGTAGCGAGCCCTGTTGCGGTGGCGCCCGCGCCAGCTGCTCGAGCTGTTGCAGGCGTTCGCGCGGTCAGCGATATT
GACTTCCAGCGAGGTGAGCAGGGCGAGGGTAATATCGTAATTTCCTTGTCCGACCCAAAAATCAGCCCTGATGTTCAAGA
GCAGGGCGGTAATATTCGTATTGATTTTCCCAAGACTCAATTGCCAGAGTCTCTGCGTGTACGCTTGGATGTAAAGGATT
TCGCTACGCCCGTACAGTTCGTTAACGCCAGTGCTTCAGCTGATCGCGCCAGTATTGTCGTCGAGCCAACGGGCCTCTAT
GACTACCTGGTTTTCCAGGCGGACAATAAGCTGACTATCAGCGTCAAGCCTCTTACCGAAGAGGATGCGGTTCGGCGTAA
CGCAGACCGCTTTACCTATACCGGTGAAAAGCTTTCTCTGAACTTTCAGGATATTGATGTTCGCTCGGTTCTGCAGCTGA
TTGCCGATTTCACGGATCTGAATCTGGTTGCCAGTGATACGGTTCGTGGAAACATCACCTTGCGATTGCAGAATGTGCCT
TGGGATCAGGCGCTGGATTTGGTGCTCAAGACCAAGGGCCTCGATCAGCGCAAAGTCGGCAATGTGCTGATGGTTGCGCC
GGCAGATGAAATCGCTGCCCGTGAGCAGCAGGAATTGGCTGTGCAGAAGCAGGTTGCCGAGTTGGCACCGTTGCGCAAGG
ACATCATTCAGCTCAATTACGCGAAAGCATCCGATATCGCCAAGCTCTACGAGGAGGGGTCATCGGGCACGTTGAAGGAC
GATATGCGTGGCTCGGTAATTTTCGATGACCGCACCAACAATCTGATCGTGACCCTTACTCAGGAGCGTATCGACGAGCT
CCGCCGTATTGTCACCCAACTGGATATCCCGGTTCGTCAGGTGATGATCGAGGCTCGCATTGTTGAAGCGAATGTCGATT
ATGACAAGTCGCTGGGTGTTCGCTGGGGTGGGAACCTCAGCTCGGGTAACTGGAGTGCGCGAGGCAAGAATGGCAACCTC
ACTTTGGGTGAGGAAACTGATGGCGTGCAGCAGATCGATATTCCTTTCAATACGCCCTTCGTTGATCTCGGGGCCAGCGG
AAGCACTTCTGGTATTGGTATAGGTTTCATTACCAACAATACTGTGCTCGATTTGCAACTCAGCGCTATGGAAAAGTCGG
GCTCCGGAGAGGTTGTGTCCCAGCCCAAGGTTGTAACTTCCGACAAGGAAACGGCAAAGATCCTCAAAGGCACTGAAGTG
CCTTATCAGGAGGCGAGTTCCAGTGGTGCAACCAGCACTTCTTTCAAAGAAGCTGCTTTGTCGCTCGAGGTGACGCCGCA
GATCACGCCTGACAACCGTGTGCTGATGGAGGTCAAGGTTACCAAAGATGCGCCTGACTTTTCTGTTGCTTCCTCCACGG
GTGGTATCCCTGCCATTAGCAAGAACGAGGTCAACGCTAAGGTTCTTGTGGCGGATGGCGAGACCATCGTGATCGGTGGC
GTGTATTCCAATACCCAGTCCAAGTCGGTTGACAAGGTACCGTTCCTGGGTGATCTGCCCTTTATCGGTCGGGTATTCAA
GCGTGATCTGGTTCAGGACAGGAAGGCGGAATTGCTTGTATTCCTCACTCCGCGCATCATGAACAACCAAGCCATTGCCG
TGAACCGATGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-122)

Secretin and TonB N terminus short domain (STN)

(301-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-440)

Bacterial type II and III secretion system protein (Secretin)

(529-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.261

100

0.749
  comQ Acinetobacter baylyi ADP1

41.528

100

0.43
  pilQ Acinetobacter baumannii strain A118

39.865

100

0.424
  pilQ Acinetobacter baumannii D1279779

39.865

100

0.424

Multiple sequence alignment