Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAEQ75_RS03135 Genome accession   NZ_CP154631
Coordinates   644074..645414 (+) Length   446 a.a.
NCBI ID   WP_343350864.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain I4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 639074..650414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEQ75_RS03110 (AAEQ75_03110) pgeF 639227..639958 (-) 732 WP_343350862.1 peptidoglycan editing factor PgeF -
  AAEQ75_RS03115 (AAEQ75_03115) rluD 639955..640929 (-) 975 WP_343350863.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAEQ75_RS03120 (AAEQ75_03120) - 641068..642060 (+) 993 WP_179575669.1 outer membrane protein assembly factor BamD -
  AAEQ75_RS03125 (AAEQ75_03125) - 642253..642489 (+) 237 WP_099522406.1 PP0621 family protein -
  AAEQ75_RS03130 (AAEQ75_03130) pilS 642479..644071 (+) 1593 WP_343352318.1 ATP-binding protein Regulator
  AAEQ75_RS03135 (AAEQ75_03135) pilR 644074..645414 (+) 1341 WP_343350864.1 sigma-54 dependent transcriptional regulator Regulator
  AAEQ75_RS03140 (AAEQ75_03140) thiO 645506..646600 (-) 1095 WP_343350865.1 glycine oxidase ThiO -
  AAEQ75_RS03145 (AAEQ75_03145) - 646691..647200 (+) 510 WP_343350866.1 GspH/FimT family pseudopilin -
  AAEQ75_RS03150 (AAEQ75_03150) - 647310..647801 (+) 492 WP_143506889.1 GspH/FimT family pseudopilin -
  AAEQ75_RS03155 (AAEQ75_03155) pilV 647798..648316 (+) 519 WP_343350867.1 type IV pilus modification protein PilV -
  AAEQ75_RS03160 (AAEQ75_03160) - 648319..649041 (+) 723 WP_343350868.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AAEQ75_RS03165 (AAEQ75_03165) - 649038..649598 (+) 561 WP_343350869.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49790.12 Da        Isoelectric Point: 5.6116

>NTDB_id=993844 AAEQ75_RS03135 WP_343350864.1 644074..645414(+) (pilR) [Pseudomonas sediminis strain I4]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEETPVDSRLLGDSPPMKSLRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLADVM
LARLADGTGLAAAKLHPDALEKLKSYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPSNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=993844 AAEQ75_RS03135 WP_343350864.1 644074..645414(+) (pilR) [Pseudomonas sediminis strain I4]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAGCCCGACATCCGCGAGTTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGTGCCCGCAATGTCAAGGAGGCGCGCGAGTGGCTGGCGCGCGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCGGATGGTACCGGCCTCGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTTCCCGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCAACTCGCTCAAAGCCGGTGCCTTCGACTTTCTCACCAAGCCGGTGGA
CCTCGGTCGCCTGCGCGAATTGGTCGCCACAGCCCTGCGCATTCGCGCGCCCGAAGGCGAGGAAACCCCAGTCGACAGCC
GCCTGCTAGGCGACTCCCCGCCCATGAAGTCGCTGCGCAAGCAGATCCTGAAGCTTTCGCGCAGTCAGGCGCCGGTTTAT
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTGGTTGCCCGCCTGATTCATGAGCAGGGCCCACGCATCGAACAACCGTT
CGTGCCGGTCAACTGCGGCGCCATCCCCTCGGAGTTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCCATGCAGGTGAAACTGCTGCGTGCGATTCAGGAAAAAGCCGTGCGCGCAGTCGGCGGCCAGCAAGAAGTAGTTGT
CGATGTGCGCATTCTCTGCGCCACCCACAAGGACCTTGCCGCGGAAGTCGCTGCTGGCCGCTTCCGTCAGGACCTCTATT
ACCGCCTCAACGTGATTGAGTTGCGCGTACCGCCGCTGCGTGAACGTCGCGAAGATATCGCCCAGCTGGCTGACGTGATG
CTCGCGCGCCTGGCCGATGGCACCGGCCTGGCCGCCGCCAAACTGCACCCCGACGCGCTGGAAAAACTGAAGAGCTATCG
CTTCCCTGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTATACCCTCTGCGAAGACGACCAGATCACGCCCA
GCGACCTGCGCCTGGCCGATGCCAGTGGTCCCAGCAACGAGGGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTTGAG
GACTACCTCGAAGACATCGAGCGCAAGCTGATCATGCAGGCGTTGGAAGAAACGCGCTGGAACCGCACGGCGGCGGCTCA
GCGCCTGGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAGCTGGGTATCGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.238

100

0.892
  pilR Acinetobacter baumannii strain A118

49.348

100

0.509
  luxO Vibrio cholerae strain A1552

38.117

100

0.381

Multiple sequence alignment