Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAIM57_RS24895 Genome accession   NZ_CP154587
Coordinates   5129017..5130537 (+) Length   506 a.a.
NCBI ID   WP_286525690.1    Uniprot ID   -
Organism   Citrobacter freundii strain NFYY361     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5124017..5135537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIM57_RS24875 (AAIM57_24875) - 5125574..5126503 (-) 930 WP_257651987.1 branched-chain amino acid transaminase -
  AAIM57_RS24880 (AAIM57_24880) ilvM 5126521..5126784 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  AAIM57_RS24885 (AAIM57_24885) ilvG 5126781..5128427 (-) 1647 WP_257651988.1 acetolactate synthase 2 catalytic subunit -
  AAIM57_RS24890 (AAIM57_24890) ilvL 5128567..5128665 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAIM57_RS24895 (AAIM57_24895) comM 5129017..5130537 (+) 1521 WP_286525690.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAIM57_RS24900 (AAIM57_24900) maoP 5130562..5130900 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  AAIM57_RS24905 (AAIM57_24905) hdfR 5131007..5131852 (+) 846 WP_085952510.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55046.98 Da        Isoelectric Point: 7.4552

>NTDB_id=993654 AAIM57_RS24895 WP_286525690.1 5129017..5130537(+) (comM) [Citrobacter freundii strain NFYY361]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFALSLEIPLPPPGILSQNQVKG
EDSATVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=993654 AAIM57_RS24895 WP_286525690.1 5129017..5130537(+) (comM) [Citrobacter freundii strain NFYY361]
ATGTCACTATCGATTGTTCACACACGCGCTGCGTTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGGA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACACGGTGAAGGGTGCCTGATAGCCGATCATTTA
CAGGCCGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGCCCTCCGGGTACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCACAGTGCTTCTTTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGACGCACGCTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCTATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGCTCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGCCAGAACCAGGTAAAAGGA
GAAGATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAGCAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAAAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Haemophilus influenzae Rd KW20

57.059

100

0.575
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.262

99.605

0.421

Multiple sequence alignment