Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EQB41_RS05700 Genome accession   NZ_LR129840
Coordinates   1049733..1050803 (-) Length   356 a.a.
NCBI ID   WP_000817882.1    Uniprot ID   Q7ZAK7
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044733..1055803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS05685 - 1045815..1046858 (+) 1044 WP_000752698.1 dihydrolipoamide acetyltransferase -
  EQB41_RS05690 lpdA 1046904..1048607 (+) 1704 WP_001162690.1 dihydrolipoyl dehydrogenase -
  EQB41_RS05695 - 1048671..1049660 (+) 990 WP_000873994.1 lipoate--protein ligase -
  EQB41_RS05700 xerS 1049733..1050803 (-) 1071 WP_000817882.1 tyrosine recombinase XerS Machinery gene
  EQB41_RS05705 - 1051034..1051351 (-) 318 WP_127820782.1 helix-turn-helix domain-containing protein -
  EQB41_RS12370 - 1051498..1052274 (-) 777 WP_331855810.1 LA2681 family HEPN domain-containing protein -
  EQB41_RS12375 - 1052308..1052979 (-) 672 WP_232019717.1 hypothetical protein -
  EQB41_RS05715 - 1053313..1053780 (-) 468 WP_127820783.1 hypothetical protein -
  EQB41_RS05720 - 1054127..1054525 (-) 399 WP_232019718.1 DUF6680 family protein -
  EQB41_RS05725 - 1054648..1055544 (+) 897 WP_000431196.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.21 Da        Isoelectric Point: 9.6220

>NTDB_id=993654 EQB41_RS05700 WP_000817882.1 1049733..1050803(-) (xerS) [Streptococcus pneumoniae strain 4496 isolate 4496]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=993654 EQB41_RS05700 WP_000817882.1 1049733..1050803(-) (xerS) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCTACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7ZAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

100

100

1

Multiple sequence alignment