Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | QMG91_RS16845 | Genome accession | NZ_AP027049 |
| Coordinates | 3674418..3675005 (-) | Length | 195 a.a. |
| NCBI ID | WP_004405328.1 | Uniprot ID | - |
| Organism | Vibrio nigripulchritudo strain TUMSAT-V.nig2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3669418..3680005
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG91_RS16825 (TUMSATVNIG2_32670) | aroB | 3670309..3671397 (-) | 1089 | WP_281827765.1 | 3-dehydroquinate synthase | - |
| QMG91_RS16830 (TUMSATVNIG2_32680) | aroK | 3671420..3671938 (-) | 519 | WP_004405322.1 | shikimate kinase AroK | - |
| QMG91_RS16835 (TUMSATVNIG2_32690) | pilQ | 3672128..3673876 (-) | 1749 | WP_281827768.1 | type IV pilus secretin PilQ | Machinery gene |
| QMG91_RS16840 (TUMSATVNIG2_32700) | pilP | 3673913..3674425 (-) | 513 | WP_022603536.1 | pilus assembly protein PilP | Machinery gene |
| QMG91_RS16845 (TUMSATVNIG2_32710) | pilO | 3674418..3675005 (-) | 588 | WP_004405328.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QMG91_RS16850 (TUMSATVNIG2_32720) | pilN | 3675002..3675562 (-) | 561 | WP_004405329.1 | PilN domain-containing protein | Machinery gene |
| QMG91_RS16855 (TUMSATVNIG2_32730) | pilM | 3675555..3676571 (-) | 1017 | WP_004405331.1 | type IV pilus assembly protein PilM | Machinery gene |
| QMG91_RS16860 (TUMSATVNIG2_32740) | - | 3676717..3679215 (+) | 2499 | WP_281827772.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 22736.13 Da Isoelectric Point: 4.6739
>NTDB_id=99346 QMG91_RS16845 WP_004405328.1 3674418..3675005(-) (pilO) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
MIDWQELDFEDLPEWPLVAQILVLALLFLILQGVGSWFYLSPMKADLEQLKQKEQTLKSTLIIKTNKVAALPKLQEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGKKQNQEFLYRLPLNIELTGTYENIGKFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVTDE
MIDWQELDFEDLPEWPLVAQILVLALLFLILQGVGSWFYLSPMKADLEQLKQKEQTLKSTLIIKTNKVAALPKLQEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGKKQNQEFLYRLPLNIELTGTYENIGKFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVTDE
Nucleotide
Download Length: 588 bp
>NTDB_id=99346 QMG91_RS16845 WP_004405328.1 3674418..3675005(-) (pilO) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
ATGATCGATTGGCAAGAACTTGATTTCGAAGATTTACCGGAATGGCCGCTTGTTGCACAGATTTTAGTGCTGGCGCTGTT
GTTTCTGATTCTTCAAGGGGTGGGCAGTTGGTTTTATCTCTCTCCCATGAAAGCCGATCTTGAGCAGCTTAAGCAGAAAG
AGCAGACACTCAAAAGCACTCTGATTATCAAAACCAATAAGGTAGCGGCACTGCCAAAATTGCAGGAGCAGCTGGATGAA
CTCAATAGCCGTTATGACTATCTGTTAAAACAGCTTCCTGAACAGAAAGAGTTGGCAAGCATGCTGGCTTCTGTAAACGA
GCTGGGTATTCAGCATGGTTTGACTTTTACCCGCATCGATTGGGGTAAGAAGCAGAATCAGGAGTTTCTTTATCGTCTGC
CTCTGAATATTGAACTCACCGGAACTTACGAAAACATTGGTAAGTTCTCAGCGGCCATTGCCAACCTACCGCGGATCATA
AACTTCGACGATGTTGACTGGCAGCGGGTCAGTCAGGAAAGCAGCACCCTTCACTTCAGGGTAAGGGCGTACACCTATCA
GTTCAAACCGGAGGTGACCGATGAATAA
ATGATCGATTGGCAAGAACTTGATTTCGAAGATTTACCGGAATGGCCGCTTGTTGCACAGATTTTAGTGCTGGCGCTGTT
GTTTCTGATTCTTCAAGGGGTGGGCAGTTGGTTTTATCTCTCTCCCATGAAAGCCGATCTTGAGCAGCTTAAGCAGAAAG
AGCAGACACTCAAAAGCACTCTGATTATCAAAACCAATAAGGTAGCGGCACTGCCAAAATTGCAGGAGCAGCTGGATGAA
CTCAATAGCCGTTATGACTATCTGTTAAAACAGCTTCCTGAACAGAAAGAGTTGGCAAGCATGCTGGCTTCTGTAAACGA
GCTGGGTATTCAGCATGGTTTGACTTTTACCCGCATCGATTGGGGTAAGAAGCAGAATCAGGAGTTTCTTTATCGTCTGC
CTCTGAATATTGAACTCACCGGAACTTACGAAAACATTGGTAAGTTCTCAGCGGCCATTGCCAACCTACCGCGGATCATA
AACTTCGACGATGTTGACTGGCAGCGGGTCAGTCAGGAAAGCAGCACCCTTCACTTCAGGGTAAGGGCGTACACCTATCA
GTTCAAACCGGAGGTGACCGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
68.718 |
100 |
0.687 |
| pilO | Vibrio campbellii strain DS40M4 |
66.316 |
97.436 |
0.646 |