Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AAHT65_RS19715 | Genome accession | NZ_CP154443 |
| Coordinates | 3927673..3928008 (+) | Length | 111 a.a. |
| NCBI ID | WP_003153104.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain SW | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3922673..3933008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAHT65_RS19695 (AAHT65_19690) | gcvT | 3923236..3924330 (-) | 1095 | WP_343310696.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AAHT65_RS19700 (AAHT65_19695) | - | 3924791..3926461 (+) | 1671 | WP_343310697.1 | SNF2-related protein | - |
| AAHT65_RS19705 (AAHT65_19700) | - | 3926482..3927276 (+) | 795 | WP_094232411.1 | YqhG family protein | - |
| AAHT65_RS19710 (AAHT65_19705) | sinI | 3927466..3927639 (+) | 174 | WP_094232412.1 | anti-repressor SinI | Regulator |
| AAHT65_RS19715 (AAHT65_19710) | sinR | 3927673..3928008 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| AAHT65_RS19720 (AAHT65_19715) | - | 3928202..3928984 (-) | 783 | WP_063638541.1 | biofilm matrix protein TasA | - |
| AAHT65_RS19725 (AAHT65_19720) | - | 3929048..3929620 (-) | 573 | WP_010789195.1 | signal peptidase I SipW | - |
| AAHT65_RS19730 (AAHT65_19725) | tapA | 3929604..3930305 (-) | 702 | WP_343310698.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AAHT65_RS19735 (AAHT65_19730) | - | 3930567..3930890 (+) | 324 | WP_106271001.1 | DUF3889 domain-containing protein | - |
| AAHT65_RS19740 (AAHT65_19735) | - | 3930937..3931116 (-) | 180 | WP_003325435.1 | YqzE family protein | - |
| AAHT65_RS19745 (AAHT65_19740) | comGG | 3931186..3931560 (-) | 375 | WP_106270999.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| AAHT65_RS19750 (AAHT65_19745) | comGF | 3931561..3932067 (-) | 507 | WP_274379311.1 | competence type IV pilus minor pilin ComGF | - |
| AAHT65_RS19755 (AAHT65_19750) | comGE | 3931970..3932317 (-) | 348 | WP_003325432.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AAHT65_RS19760 (AAHT65_19755) | comGD | 3932301..3932741 (-) | 441 | WP_343310699.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12972.64 Da Isoelectric Point: 7.2023
>NTDB_id=993459 AAHT65_RS19715 WP_003153104.1 3927673..3928008(+) (sinR) [Bacillus atrophaeus strain SW]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=993459 AAHT65_RS19715 WP_003153104.1 3927673..3928008(+) (sinR) [Bacillus atrophaeus strain SW]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |