Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AAHT65_RS19760 Genome accession   NZ_CP154443
Coordinates   3932301..3932741 (-) Length   146 a.a.
NCBI ID   WP_343310699.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3927301..3937741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS19710 (AAHT65_19705) sinI 3927466..3927639 (+) 174 WP_094232412.1 anti-repressor SinI Regulator
  AAHT65_RS19715 (AAHT65_19710) sinR 3927673..3928008 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AAHT65_RS19720 (AAHT65_19715) - 3928202..3928984 (-) 783 WP_063638541.1 biofilm matrix protein TasA -
  AAHT65_RS19725 (AAHT65_19720) - 3929048..3929620 (-) 573 WP_010789195.1 signal peptidase I SipW -
  AAHT65_RS19730 (AAHT65_19725) tapA 3929604..3930305 (-) 702 WP_343310698.1 amyloid fiber anchoring/assembly protein TapA -
  AAHT65_RS19735 (AAHT65_19730) - 3930567..3930890 (+) 324 WP_106271001.1 DUF3889 domain-containing protein -
  AAHT65_RS19740 (AAHT65_19735) - 3930937..3931116 (-) 180 WP_003325435.1 YqzE family protein -
  AAHT65_RS19745 (AAHT65_19740) comGG 3931186..3931560 (-) 375 WP_106270999.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAHT65_RS19750 (AAHT65_19745) comGF 3931561..3932067 (-) 507 WP_274379311.1 competence type IV pilus minor pilin ComGF -
  AAHT65_RS19755 (AAHT65_19750) comGE 3931970..3932317 (-) 348 WP_003325432.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAHT65_RS19760 (AAHT65_19755) comGD 3932301..3932741 (-) 441 WP_343310699.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAHT65_RS19765 (AAHT65_19760) comGC 3932731..3933039 (-) 309 WP_087941811.1 competence type IV pilus major pilin ComGC Machinery gene
  AAHT65_RS19770 (AAHT65_19765) comGB 3933045..3934082 (-) 1038 WP_106270998.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAHT65_RS19775 (AAHT65_19770) comGA 3934069..3935139 (-) 1071 WP_088117573.1 competence type IV pilus ATPase ComGA Machinery gene
  AAHT65_RS19780 (AAHT65_19775) - 3935519..3936472 (-) 954 WP_088117575.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16596.46 Da        Isoelectric Point: 8.6807

>NTDB_id=993462 AAHT65_RS19760 WP_343310699.1 3932301..3932741(-) (comGD) [Bacillus atrophaeus strain SW]
MKINIGDEKGFTLLESLLVLCLASVMLICVFTVIPPVYKNTSARQTVARLESDILLAQQTAISKHERVRIVFLSKEHKYQ
IIMGASIVERTYEDWIFIECATLADRLDFNEKGNPNLGGKIRLKTDRLTYEMTVYLGSGKVNVERK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=993462 AAHT65_RS19760 WP_343310699.1 3932301..3932741(-) (comGD) [Bacillus atrophaeus strain SW]
TTGAAAATTAATATAGGCGATGAGAAAGGGTTTACTCTTTTAGAAAGCTTGCTCGTTTTATGTCTGGCATCCGTTATGCT
GATTTGTGTTTTTACAGTCATACCTCCCGTATATAAAAATACATCTGCCCGCCAAACTGTTGCCAGGCTTGAAAGTGACA
TTCTCCTCGCTCAGCAGACTGCAATTTCTAAGCATGAGCGGGTGCGTATCGTGTTTTTGTCCAAGGAACATAAGTACCAG
ATCATTATGGGGGCTAGTATCGTTGAACGAACCTATGAGGATTGGATTTTCATTGAATGTGCAACATTGGCCGACCGTCT
TGATTTTAATGAAAAAGGAAATCCGAATTTGGGCGGGAAAATCAGGCTGAAAACAGATCGCCTCACATATGAAATGACTG
TCTACTTAGGGAGCGGAAAAGTCAATGTGGAAAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

57.534

100

0.575

Multiple sequence alignment