Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AAHT65_RS04585 Genome accession   NZ_CP154443
Coordinates   888711..888830 (+) Length   39 a.a.
NCBI ID   WP_061572214.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 883711..893830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS04565 (AAHT65_04565) - 883758..885134 (-) 1377 WP_343311037.1 YncE family protein -
  AAHT65_RS04570 (AAHT65_04570) - 885175..886536 (-) 1362 WP_343311038.1 YncE family protein -
  AAHT65_RS04575 (AAHT65_04575) - 886820..887374 (+) 555 WP_343311039.1 YdhK family protein -
  AAHT65_RS04580 (AAHT65_04580) rapF 887585..888727 (+) 1143 WP_106360166.1 tetratricopeptide repeat protein Regulator
  AAHT65_RS04585 (AAHT65_04585) phrF 888711..888830 (+) 120 WP_061572214.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AAHT65_RS04590 (AAHT65_04590) - 889084..889563 (+) 480 WP_343311040.1 hypothetical protein -
  AAHT65_RS04595 (AAHT65_04595) - 889712..890500 (+) 789 WP_088118184.1 hypothetical protein -
  AAHT65_RS04600 (AAHT65_04600) - 890487..891161 (+) 675 WP_035175329.1 hypothetical protein -
  AAHT65_RS04605 (AAHT65_04605) - 891171..891968 (+) 798 WP_343311504.1 hypothetical protein -
  AAHT65_RS04610 (AAHT65_04610) - 891971..892618 (+) 648 WP_343311041.1 ABC transporter ATP-binding protein -
  AAHT65_RS04615 (AAHT65_04615) - 892611..893168 (+) 558 WP_343311042.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4218.12 Da        Isoelectric Point: 9.4191

>NTDB_id=993413 AAHT65_RS04585 WP_061572214.1 888711..888830(+) (phrF) [Bacillus atrophaeus strain SW]
MKLKSKILLSCLALSTVFVATSIETAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=993413 AAHT65_RS04585 WP_061572214.1 888711..888830(+) (phrF) [Bacillus atrophaeus strain SW]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTCAGCACAGTGTTTGTCGCAACGAGTATTGAAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

81.481

69.231

0.564
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436
  comEA Vibrio cholerae C6706

45.714

89.744

0.41
  comEA Vibrio cholerae strain A1552

45.714

89.744

0.41

Multiple sequence alignment