Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAIA71_RS02160 Genome accession   NZ_CP154266
Coordinates   454713..455252 (+) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain N8T11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 449713..460252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA71_RS02145 (AAIA71_02145) uvrA 449780..452602 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  AAIA71_RS02150 (AAIA71_02150) galU 452740..453612 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAIA71_RS02155 (AAIA71_02155) qstR 453774..454418 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  AAIA71_RS02160 (AAIA71_02160) ssb 454713..455252 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  AAIA71_RS02165 (AAIA71_02165) csrD 455504..457513 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  AAIA71_RS02170 (AAIA71_02170) - 457525..457926 (+) 402 Protein_383 MSHA biogenesis protein MshI -
  AAIA71_RS02175 (AAIA71_02175) - 457980..458900 (-) 921 WP_141342057.1 IS5 family transposase -
  AAIA71_RS02180 (AAIA71_02180) - 458971..459120 (+) 150 Protein_385 MSHA biogenesis protein MshJ -
  AAIA71_RS02185 (AAIA71_02185) - 459113..459442 (+) 330 WP_009698822.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=992827 AAIA71_RS02160 WP_005444320.1 454713..455252(+) (ssb) [Vibrio harveyi strain N8T11]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=992827 AAIA71_RS02160 WP_005444320.1 454713..455252(+) (ssb) [Vibrio harveyi strain N8T11]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAACAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464

Multiple sequence alignment