Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AAIA71_RS02155 Genome accession   NZ_CP154266
Coordinates   453774..454418 (-) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain N8T11     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 448774..459418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA71_RS02145 (AAIA71_02145) uvrA 449780..452602 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  AAIA71_RS02150 (AAIA71_02150) galU 452740..453612 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAIA71_RS02155 (AAIA71_02155) qstR 453774..454418 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  AAIA71_RS02160 (AAIA71_02160) ssb 454713..455252 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  AAIA71_RS02165 (AAIA71_02165) csrD 455504..457513 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  AAIA71_RS02170 (AAIA71_02170) - 457525..457926 (+) 402 Protein_383 MSHA biogenesis protein MshI -
  AAIA71_RS02175 (AAIA71_02175) - 457980..458900 (-) 921 WP_141342057.1 IS5 family transposase -
  AAIA71_RS02180 (AAIA71_02180) - 458971..459120 (+) 150 Protein_385 MSHA biogenesis protein MshJ -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=992826 AAIA71_RS02155 WP_009698824.1 453774..454418(-) (qstR) [Vibrio harveyi strain N8T11]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=992826 AAIA71_RS02155 WP_009698824.1 453774..454418(-) (qstR) [Vibrio harveyi strain N8T11]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACCTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment