Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAIA70_RS14520 Genome accession   NZ_CP154264
Coordinates   3133939..3134478 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain 45T2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3128939..3139478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA70_RS14500 (AAIA70_14500) - 3129249..3129578 (-) 330 WP_343291029.1 MSHA biogenesis protein MshK -
  AAIA70_RS14505 (AAIA70_14505) gspM 3129571..3130221 (-) 651 WP_017187909.1 type II secretion system protein GspM -
  AAIA70_RS14510 (AAIA70_14510) - 3130218..3131666 (-) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  AAIA70_RS14515 (AAIA70_14515) csrD 3131678..3133687 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  AAIA70_RS14520 (AAIA70_14520) ssb 3133939..3134478 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  AAIA70_RS14525 (AAIA70_14525) qstR 3134773..3135417 (+) 645 WP_050906941.1 LuxR C-terminal-related transcriptional regulator Regulator
  AAIA70_RS14530 (AAIA70_14530) galU 3135579..3136451 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAIA70_RS14535 (AAIA70_14535) uvrA 3136589..3139411 (+) 2823 WP_029789689.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=992800 AAIA70_RS14520 WP_005444320.1 3133939..3134478(-) (ssb) [Vibrio harveyi strain 45T2]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=992800 AAIA70_RS14520 WP_005444320.1 3133939..3134478(-) (ssb) [Vibrio harveyi strain 45T2]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGGGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464

Multiple sequence alignment