Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ACKTSO_RS05920 | Genome accession | NZ_AP035889 |
| Coordinates | 1189149..1190147 (+) | Length | 332 a.a. |
| NCBI ID | WP_039166859.1 | Uniprot ID | - |
| Organism | Gallibacterium anatis strain SMUHGa01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1184149..1195147
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTSO_RS05890 (SMUG_11450) | gorA | 1184510..1185859 (-) | 1350 | WP_094933192.1 | glutathione-disulfide reductase | - |
| ACKTSO_RS05895 (SMUG_11460) | - | 1185966..1186808 (-) | 843 | WP_407903065.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| ACKTSO_RS05900 (SMUG_11470) | - | 1186819..1187361 (-) | 543 | WP_407903066.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| ACKTSO_RS05905 (SMUG_11480) | - | 1187419..1187928 (-) | 510 | WP_407903147.1 | DMT family transporter | - |
| ACKTSO_RS05910 | - | 1187905..1188225 (-) | 321 | Protein_1141 | EamA family transporter | - |
| ACKTSO_RS05915 (SMUG_11490) | ruvA | 1188519..1189127 (+) | 609 | WP_407903067.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| ACKTSO_RS05920 (SMUG_11500) | ruvB | 1189149..1190147 (+) | 999 | WP_039166859.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ACKTSO_RS05925 (SMUG_11510) | hutZ | 1190511..1191029 (-) | 519 | WP_035687799.1 | heme utilization protein HutZ | - |
| ACKTSO_RS05930 (SMUG_11520) | hutX | 1191023..1191532 (-) | 510 | WP_094873927.1 | heme utilization cystosolic carrier protein HutX | - |
| ACKTSO_RS05935 (SMUG_11530) | - | 1191554..1192924 (-) | 1371 | WP_407903068.1 | TonB-dependent receptor domain-containing protein | - |
| ACKTSO_RS05940 (SMUG_11540) | - | 1192819..1193685 (-) | 867 | WP_407903069.1 | TonB-dependent receptor plug domain-containing protein | - |
Sequence
Protein
Download Length: 332 a.a. Molecular weight: 37199.78 Da Isoelectric Point: 4.8781
>NTDB_id=99273 ACKTSO_RS05920 WP_039166859.1 1189149..1190147(+) (ruvB) [Gallibacterium anatis strain SMUHGa01]
MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNDG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIA
TLHTYRHFGVSK
MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNDG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTPRGRIA
TLHTYRHFGVSK
Nucleotide
Download Length: 999 bp
>NTDB_id=99273 ACKTSO_RS05920 WP_039166859.1 1189149..1190147(+) (ruvB) [Gallibacterium anatis strain SMUHGa01]
ATGATTGAAGCAGACCGTATTATCAGCCCTACGGCAAAAGAGGAAGAAGAGTATATCGACCGTGCAATCCGTCCAAAATT
GTTGCAGGATTATGTTGGACAACCGCACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCGAAAATGCGTAATGATG
CACTTGATCATCTGTTGATTTTTGGCCCTCCCGGTTTGGGCAAAACCACATTAGCCAATATTGTTGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGTCCGGTGTTGGAAAAAGCAGGCGATTTGGCAGCAATGTTGACCAATTTAGAGCCTTA
CGACGTGCTGTTTATTGATGAAATTCATCGTTTATCACCGGCAATCGAGGAGGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACGCGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTCGGCATTGTTCAACGCTTGGAATTTTATTCGATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGTTCACGCGGCACACCACGAATTGTAAATCGATTATTGCGTCGTGTTCGCGATTATGCCGATGTAAAAAATGACGGT
TTTATTTCGGTAGAGATTGCTAAATTGGCATTAACGATGTTGGATATTGATTCAGAAGGCTTTGACTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGTGGTCCAGTTGGTTTGGATAATTTAGCTGCAGCGATTGGCGAAGAGA
AAGAAACAATAGAAGATGTTTTGGAACCTTATTTAATTCAACAAGGCTTCTTACAACGTACTCCACGAGGAAGAATCGCC
ACATTGCATACTTATCGACATTTTGGAGTAAGTAAATAA
ATGATTGAAGCAGACCGTATTATCAGCCCTACGGCAAAAGAGGAAGAAGAGTATATCGACCGTGCAATCCGTCCAAAATT
GTTGCAGGATTATGTTGGACAACCGCACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCGAAAATGCGTAATGATG
CACTTGATCATCTGTTGATTTTTGGCCCTCCCGGTTTGGGCAAAACCACATTAGCCAATATTGTTGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGTCCGGTGTTGGAAAAAGCAGGCGATTTGGCAGCAATGTTGACCAATTTAGAGCCTTA
CGACGTGCTGTTTATTGATGAAATTCATCGTTTATCACCGGCAATCGAGGAGGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACGCGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTCGGCATTGTTCAACGCTTGGAATTTTATTCGATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGTTCACGCGGCACACCACGAATTGTAAATCGATTATTGCGTCGTGTTCGCGATTATGCCGATGTAAAAAATGACGGT
TTTATTTCGGTAGAGATTGCTAAATTGGCATTAACGATGTTGGATATTGATTCAGAAGGCTTTGACTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGTGGTCCAGTTGGTTTGGATAATTTAGCTGCAGCGATTGGCGAAGAGA
AAGAAACAATAGAAGATGTTTTGGAACCTTATTTAATTCAACAAGGCTTCTTACAACGTACTCCACGAGGAAGAATCGCC
ACATTGCATACTTATCGACATTTTGGAGTAAGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.963 |
97.59 |
0.614 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.333 |
97.59 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
58.333 |
97.59 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
58.333 |
97.59 |
0.569 |
| ruvB | Synechocystis sp. PCC 6803 |
51.964 |
99.699 |
0.518 |
| ruvB | Helicobacter pylori 26695 |
53.271 |
96.687 |
0.515 |