Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACKTSO_RS05915 Genome accession   NZ_AP035889
Coordinates   1188519..1189127 (+) Length   202 a.a.
NCBI ID   WP_407903067.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1183519..1194127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS05890 (SMUG_11450) gorA 1184510..1185859 (-) 1350 WP_094933192.1 glutathione-disulfide reductase -
  ACKTSO_RS05895 (SMUG_11460) - 1185966..1186808 (-) 843 WP_407903065.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ACKTSO_RS05900 (SMUG_11470) - 1186819..1187361 (-) 543 WP_407903066.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACKTSO_RS05905 (SMUG_11480) - 1187419..1187928 (-) 510 WP_407903147.1 DMT family transporter -
  ACKTSO_RS05910 - 1187905..1188225 (-) 321 Protein_1141 EamA family transporter -
  ACKTSO_RS05915 (SMUG_11490) ruvA 1188519..1189127 (+) 609 WP_407903067.1 Holliday junction branch migration protein RuvA Machinery gene
  ACKTSO_RS05920 (SMUG_11500) ruvB 1189149..1190147 (+) 999 WP_039166859.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACKTSO_RS05925 (SMUG_11510) hutZ 1190511..1191029 (-) 519 WP_035687799.1 heme utilization protein HutZ -
  ACKTSO_RS05930 (SMUG_11520) hutX 1191023..1191532 (-) 510 WP_094873927.1 heme utilization cystosolic carrier protein HutX -
  ACKTSO_RS05935 (SMUG_11530) - 1191554..1192924 (-) 1371 WP_407903068.1 TonB-dependent receptor domain-containing protein -
  ACKTSO_RS05940 (SMUG_11540) - 1192819..1193685 (-) 867 WP_407903069.1 TonB-dependent receptor plug domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22687.30 Da        Isoelectric Point: 6.2422

>NTDB_id=99272 ACKTSO_RS05915 WP_407903067.1 1188519..1189127(+) (ruvA) [Gallibacterium anatis strain SMUHGa01]
MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEASIYTHLVVREDAHLLFGFYHKQDRTLFRELIKTNG
VGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKTAERLIVELKGKFKAYQHDDFFIEQTTTQSGIETDKVSATD
DAISALVALGYKPAEAEKMVKRVAKPEWDSEQLIREALKNAL

Nucleotide


Download         Length: 609 bp        

>NTDB_id=99272 ACKTSO_RS05915 WP_407903067.1 1188519..1189127(+) (ruvA) [Gallibacterium anatis strain SMUHGa01]
ATGATTGGGCATTTACGCGGTATTTTATTGGAAAAATCACCACCAGAAATCTTATTAGAGGTGAACGGTATAGGTTATGA
AGTTTTATTACCAATGACTAGTTTTTATCATTTACCGGAAGTTAATATGGAAGCATCCATTTATACGCATTTAGTAGTGA
GAGAAGATGCGCATCTGCTATTCGGTTTCTATCATAAGCAGGATCGCACACTATTTAGAGAATTAATCAAAACCAATGGT
GTCGGCCCTAAATTAGCGTTGGCTATTTTGTCAGCTATGTCGGTAAGCGAATTTTCTTATGCGATAGAACGTGAAGAGTT
GTCGAAGTTGGTGAAGATCCCCGGAGTGGGAAAGAAAACCGCCGAGCGTTTGATTGTTGAACTGAAAGGCAAATTTAAAG
CGTATCAGCACGATGATTTCTTTATTGAACAGACCACAACGCAAAGCGGCATTGAAACAGACAAAGTTTCCGCAACGGAT
GACGCCATTTCTGCGTTGGTTGCATTGGGTTATAAACCGGCAGAAGCAGAAAAAATGGTGAAACGTGTGGCAAAACCGGA
ATGGGATAGCGAACAGTTGATTCGTGAAGCCTTGAAGAATGCCTTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(158-200)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.722

100

0.371
  ruvA Streptococcus pneumoniae R6

37.688

98.515

0.371
  ruvA Streptococcus pneumoniae TIGR4

37.688

98.515

0.371
  ruvA Streptococcus pneumoniae D39

37.688

98.515

0.371

Multiple sequence alignment