Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHU04_RS23645 Genome accession   NZ_CP154213
Coordinates   4918615..4920135 (+) Length   506 a.a.
NCBI ID   WP_017899414.1    Uniprot ID   A0AAE4MU22
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13377     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4913615..4925135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHU04_RS23620 (AAHU04_23575) ilvE 4915175..4916104 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  AAHU04_RS23625 (AAHU04_23580) ilvM 4916121..4916378 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AAHU04_RS23630 (AAHU04_23585) ilvG 4916375..4918021 (-) 1647 WP_323109448.1 acetolactate synthase 2 catalytic subunit -
  AAHU04_RS23635 ilvX 4918024..4918077 (-) 54 WP_201281575.1 peptide IlvX -
  AAHU04_RS23640 (AAHU04_23590) ilvL 4918162..4918260 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHU04_RS23645 (AAHU04_23595) comM 4918615..4920135 (+) 1521 WP_017899414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHU04_RS23650 (AAHU04_23600) - 4920160..4920498 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHU04_RS23655 (AAHU04_23605) hdfR 4920617..4921438 (+) 822 WP_069603120.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55136.45 Da        Isoelectric Point: 8.4873

>NTDB_id=992652 AAHU04_RS23645 WP_017899414.1 4918615..4920135(+) (comM) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13377]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPSVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=992652 AAHU04_RS23645 WP_017899414.1 4918615..4920135(+) (comM) [Klebsiella quasipneumoniae subsp. similipneumoniae strain KP_NORM_BLD_13377]
ATGTCGCTCGCCATCGTCTATACCCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACCACCGTGAAAGAGGCCCGTGACCGGGTTCGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGCGA
TACGATCTACCTATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATCGTCGTCTCCTCTGATAATGCGGCTGAGGTCGGCCTGATCGGGGGCAGTGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTATGCGCTTTTCTCGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCACCCTCTGTTGATGAACGCGG
CGAAGATCTGCGCGATGTTATCGGCCAGCAGCAGGGCAAGCGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATCGGCCCACCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCCCTGGAGAGCACGGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCACCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCTCTGGCCC
ATAATGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGACAACGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGACAAAATAAGCTCAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTCTCTATACGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.47

100

0.611
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment