Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHU30_RS26050 Genome accession   NZ_CP154159
Coordinates   5371254..5372774 (+) Length   506 a.a.
NCBI ID   WP_055323048.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain KP_NORM_BLD_13886     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5366254..5377774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHU30_RS26025 (AAHU30_25970) - 5367811..5368740 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHU30_RS26030 (AAHU30_25975) ilvM 5368760..5369017 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  AAHU30_RS26035 (AAHU30_25980) ilvG 5369014..5370660 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHU30_RS26040 ilvX 5370663..5370716 (-) 54 WP_201281575.1 peptide IlvX -
  AAHU30_RS26045 (AAHU30_25985) ilvL 5370801..5370899 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHU30_RS26050 (AAHU30_25990) comM 5371254..5372774 (+) 1521 WP_055323048.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHU30_RS26055 (AAHU30_25995) - 5372799..5373137 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHU30_RS26060 (AAHU30_26000) hdfR 5373256..5374077 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55111.60 Da        Isoelectric Point: 8.4883

>NTDB_id=992557 AAHU30_RS26050 WP_055323048.1 5371254..5372774(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_13886]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGIRGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=992557 AAHU30_RS26050 WP_055323048.1 5371254..5372774(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_13886]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTCGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGCTG
TGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAATCTGC
TCCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGTGGCTCAATACCTGCCCCAGGCGAGATTTCACTGGCCC
ATAATGGCGTCCTATTTCTTGATGAGCTACCGGAGTTTGAGCGGCGGGTGCTGGATGCGCTACGTGAGCCCATTGAGTCA
GGCAAGATCCACATATCGCGATCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCAGCAATGAACCCAAG
CCCGACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGACGCCTGTCTGGCC
CTTTTCTCGACCGCTTCGATCTCTCCTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCATACGAGGTGAA
GAATCGAGTGCGACAGTCCGTCAGCGTGTGCTGGCAGCGCGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGGCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGC
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.352

100

0.611
  comM Glaesserella parasuis strain SC1401

59.649

100

0.605
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Legionella pneumophila str. Paris

49.296

98.221

0.484
  comM Legionella pneumophila strain ERS1305867

49.296

98.221

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449

Multiple sequence alignment