Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHV21_RS25530 Genome accession   NZ_CP153996
Coordinates   5265526..5267046 (+) Length   506 a.a.
NCBI ID   WP_055323048.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain KP_NORM_BLD_60778     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5260526..5272046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHV21_RS25505 (AAHV21_25445) - 5262083..5263012 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHV21_RS25510 (AAHV21_25450) ilvM 5263032..5263289 (-) 258 WP_055323049.1 acetolactate synthase 2 small subunit -
  AAHV21_RS25515 (AAHV21_25455) ilvG 5263286..5264932 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHV21_RS25520 ilvX 5264935..5264988 (-) 54 WP_201281575.1 peptide IlvX -
  AAHV21_RS25525 (AAHV21_25460) ilvL 5265073..5265171 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHV21_RS25530 (AAHV21_25465) comM 5265526..5267046 (+) 1521 WP_055323048.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHV21_RS25535 (AAHV21_25470) - 5267071..5267409 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHV21_RS25540 (AAHV21_25475) hdfR 5267528..5268349 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55111.60 Da        Isoelectric Point: 8.4883

>NTDB_id=992487 AAHV21_RS25530 WP_055323048.1 5265526..5267046(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_60778]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGIRGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=992487 AAHV21_RS25530 WP_055323048.1 5265526..5267046(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_60778]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGTTG
TGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAATCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTCTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGTGGCTCAATACCTGCCCCAGGCGAGATTTCACTGGCCC
ATAATGGCGTCCTATTTCTTGATGAGCTACCGGAGTTTGAGCGGCGGGTGCTGGATGCGCTACGTGAGCCCATTGAGTCA
GGCAAGATCCACATATCGCGATCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCAGCAATGAACCCAAG
CCCGACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGACGCCTGTCTGGCC
CTTTTCTCGACCGCTTCGATCTCTCCTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCATACGAGGTGAA
GAATCGAGTGCGACAGTCCGTCAGCGTGTGCTGGCAGCGCGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGGCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGC
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.352

100

0.611
  comM Glaesserella parasuis strain SC1401

59.649

100

0.605
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Legionella pneumophila str. Paris

49.296

98.221

0.484
  comM Legionella pneumophila strain ERS1305867

49.296

98.221

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449

Multiple sequence alignment