Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | QMG46_RS09210 | Genome accession | NZ_AP027042 |
| Coordinates | 2079349..2080515 (+) | Length | 388 a.a. |
| NCBI ID | WP_281852212.1 | Uniprot ID | - |
| Organism | Dyella sp. GSA-30 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2074349..2085515
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG46_RS09180 (DYGSA30_18220) | - | 2074595..2075107 (+) | 513 | WP_281852205.1 | hypothetical protein | - |
| QMG46_RS09185 (DYGSA30_18230) | - | 2075165..2075968 (+) | 804 | WP_281852206.1 | cobalamin-binding protein | - |
| QMG46_RS09190 (DYGSA30_18240) | - | 2075940..2076554 (-) | 615 | WP_281852207.1 | hypothetical protein | - |
| QMG46_RS09195 (DYGSA30_18250) | - | 2076577..2077164 (-) | 588 | WP_281852208.1 | YggT family protein | - |
| QMG46_RS09200 (DYGSA30_18260) | proC | 2077161..2077991 (-) | 831 | WP_281852209.1 | pyrroline-5-carboxylate reductase | - |
| QMG46_RS09205 (DYGSA30_18270) | pilT | 2078289..2079326 (+) | 1038 | WP_281852211.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QMG46_RS09210 (DYGSA30_18280) | pilU | 2079349..2080515 (+) | 1167 | WP_281852212.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QMG46_RS09215 | - | 2080527..2082920 (-) | 2394 | WP_281852213.1 | fimbria/pilus outer membrane usher protein | - |
| QMG46_RS09220 (DYGSA30_18300) | - | 2082999..2083709 (-) | 711 | WP_281852214.1 | DUF1120 domain-containing protein | - |
| QMG46_RS09225 (DYGSA30_18310) | - | 2083713..2084414 (-) | 702 | WP_281852215.1 | fimbria/pilus chaperone family protein | - |
| QMG46_RS09230 (DYGSA30_18320) | - | 2084643..2085014 (-) | 372 | WP_281852216.1 | BON domain-containing protein | - |
Sequence
Protein
Download Length: 388 a.a. Molecular weight: 43526.81 Da Isoelectric Point: 6.7709
>NTDB_id=99247 QMG46_RS09210 WP_281852212.1 2079349..2080515(+) (pilU) [Dyella sp. GSA-30]
MSDFDFTSFLKLMVHKKASDLFITAGIAPSMKVQGRVVPITQSPLSAQQSRDMVLNVMTPSQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVIKQLAMTKRGIIIFVGGTGTGKSTSLASMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREIGIDTDNWENALKNTLRQAPDVIMIGEVRTRETMEYAINFSETGHLCLCTLHANNANQAL
DRILHFFAEDRRQQLFMDLSLNLKGIVAQQLIPTPDGKARRVAVEVMLGTPLVQDYIRQGEIHKLKEVMKESTNLGMKTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEETRDSQNFGGGLYQR
MSDFDFTSFLKLMVHKKASDLFITAGIAPSMKVQGRVVPITQSPLSAQQSRDMVLNVMTPSQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVIKQLAMTKRGIIIFVGGTGTGKSTSLASMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREIGIDTDNWENALKNTLRQAPDVIMIGEVRTRETMEYAINFSETGHLCLCTLHANNANQAL
DRILHFFAEDRRQQLFMDLSLNLKGIVAQQLIPTPDGKARRVAVEVMLGTPLVQDYIRQGEIHKLKEVMKESTNLGMKTF
DQSLVELYHAGEISYEDALRHADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEETRDSQNFGGGLYQR
Nucleotide
Download Length: 1167 bp
>NTDB_id=99247 QMG46_RS09210 WP_281852212.1 2079349..2080515(+) (pilU) [Dyella sp. GSA-30]
ATGAGCGATTTCGACTTCACCTCGTTCCTGAAACTGATGGTCCACAAGAAGGCCTCGGACCTTTTCATCACGGCCGGCAT
TGCGCCGTCGATGAAGGTGCAGGGGCGCGTGGTGCCGATCACCCAGAGCCCGCTGTCGGCGCAGCAGTCGCGCGACATGG
TGCTCAACGTGATGACGCCTTCGCAGCGCGAGGAGTTCGAAAAGACTCACGAGTGCCAGTTTGCGATCTCGGCGCAGGGC
GTAGGCCGCTTCCGCGTCTCGTGCTTCTACCAGCGCAATTGCGTCGGCATGGTGCTGCGCCGGATCGAATCGAAGATTCC
GACCATCGAAGAGCTGACCCTGCCGCCGGTGATCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
GTACCGGTACCGGTAAGTCGACCTCGCTCGCCTCGATGATCGGCTACCGCAACCAGAACTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAATACGTGCACAAGCACGAGGGCTGCATCATCACGCAGCGCGAGATCGGCATCGATACGGACAA
CTGGGAAAACGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCATGATCGGCGAAGTGCGTACGCGTGAAACCA
TGGAATACGCGATCAACTTCTCCGAAACCGGTCACCTGTGCCTGTGCACGCTGCATGCGAACAACGCCAACCAGGCACTG
GACCGCATCCTGCACTTCTTCGCCGAGGATCGCCGCCAGCAGTTGTTCATGGACTTGTCCCTGAACCTCAAGGGCATCGT
CGCGCAGCAGCTGATCCCGACACCGGACGGCAAGGCGCGTCGCGTGGCGGTGGAAGTCATGCTGGGTACGCCGCTGGTGC
AGGATTACATCCGTCAGGGCGAGATCCACAAGCTCAAGGAAGTGATGAAGGAATCGACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGGTCGAGCTCTATCACGCCGGTGAGATCTCCTACGAAGACGCTCTGCGTCACGCCGACAGCTCCAACGA
AGTGCGCCTGCGCATCAAGCTCGCGCAGGGCGGCGATGCACATACCCTGTCGCAGGGTCTCGATGGCGTGGAGCTGGAAG
AGACACGCGACAGCCAGAACTTCGGTGGTGGCTTGTACCAGCGCTGA
ATGAGCGATTTCGACTTCACCTCGTTCCTGAAACTGATGGTCCACAAGAAGGCCTCGGACCTTTTCATCACGGCCGGCAT
TGCGCCGTCGATGAAGGTGCAGGGGCGCGTGGTGCCGATCACCCAGAGCCCGCTGTCGGCGCAGCAGTCGCGCGACATGG
TGCTCAACGTGATGACGCCTTCGCAGCGCGAGGAGTTCGAAAAGACTCACGAGTGCCAGTTTGCGATCTCGGCGCAGGGC
GTAGGCCGCTTCCGCGTCTCGTGCTTCTACCAGCGCAATTGCGTCGGCATGGTGCTGCGCCGGATCGAATCGAAGATTCC
GACCATCGAAGAGCTGACCCTGCCGCCGGTGATCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
GTACCGGTACCGGTAAGTCGACCTCGCTCGCCTCGATGATCGGCTACCGCAACCAGAACTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAATACGTGCACAAGCACGAGGGCTGCATCATCACGCAGCGCGAGATCGGCATCGATACGGACAA
CTGGGAAAACGCGCTGAAGAACACGCTGCGCCAGGCGCCCGACGTGATCATGATCGGCGAAGTGCGTACGCGTGAAACCA
TGGAATACGCGATCAACTTCTCCGAAACCGGTCACCTGTGCCTGTGCACGCTGCATGCGAACAACGCCAACCAGGCACTG
GACCGCATCCTGCACTTCTTCGCCGAGGATCGCCGCCAGCAGTTGTTCATGGACTTGTCCCTGAACCTCAAGGGCATCGT
CGCGCAGCAGCTGATCCCGACACCGGACGGCAAGGCGCGTCGCGTGGCGGTGGAAGTCATGCTGGGTACGCCGCTGGTGC
AGGATTACATCCGTCAGGGCGAGATCCACAAGCTCAAGGAAGTGATGAAGGAATCGACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGGTCGAGCTCTATCACGCCGGTGAGATCTCCTACGAAGACGCTCTGCGTCACGCCGACAGCTCCAACGA
AGTGCGCCTGCGCATCAAGCTCGCGCAGGGCGGCGATGCACATACCCTGTCGCAGGGTCTCGATGGCGTGGAGCTGGAAG
AGACACGCGACAGCCAGAACTTCGGTGGTGGCTTGTACCAGCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
65.508 |
96.392 |
0.631 |
| pilU | Acinetobacter baylyi ADP1 |
62.64 |
91.753 |
0.575 |
| pilU | Vibrio cholerae strain A1552 |
51.966 |
91.753 |
0.477 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.247 |
95.876 |
0.376 |