Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LA521A_RS18290 Genome accession   NZ_AP027041
Coordinates   4016116..4017630 (+) Length   504 a.a.
NCBI ID   WP_281780253.1    Uniprot ID   -
Organism   Lysobacter auxotrophicus strain 5-21a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4011116..4022630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA521A_RS18265 (LA521A_35960) speE 4012268..4013122 (+) 855 WP_281780249.1 polyamine aminopropyltransferase -
  LA521A_RS18270 (LA521A_35970) - 4013368..4014024 (+) 657 WP_281780250.1 phosphotransferase -
  LA521A_RS18275 (LA521A_35980) - 4014026..4015138 (-) 1113 WP_281780251.1 acyltransferase -
  LA521A_RS18280 (LA521A_35990) - 4015294..4015632 (-) 339 WP_206862090.1 P-II family nitrogen regulator -
  LA521A_RS18285 (LA521A_36000) - 4015821..4016099 (+) 279 WP_281780252.1 accessory factor UbiK family protein -
  LA521A_RS18290 (LA521A_36010) comM 4016116..4017630 (+) 1515 WP_281780253.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LA521A_RS18295 (LA521A_36020) - 4017663..4018145 (-) 483 WP_281780254.1 hypothetical protein -
  LA521A_RS18300 (LA521A_36030) - 4018212..4018685 (-) 474 WP_281780255.1 hypothetical protein -
  LA521A_RS18305 (LA521A_36040) - 4018850..4020025 (-) 1176 WP_281780256.1 putative peptide maturation dehydrogenase -
  LA521A_RS18310 (LA521A_36050) - 4020259..4020606 (+) 348 WP_281780257.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53019.93 Da        Isoelectric Point: 8.5319

>NTDB_id=99240 LA521A_RS18290 WP_281780253.1 4016116..4017630(+) (comM) [Lysobacter auxotrophicus strain 5-21a]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVREAKDRVRAAILCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIPLEALGDGEFLGELGLTGELRAVDGVLPAALAAGDAGRRLIVPAGNGAEAALASRVEVRTARTL
LEVCAHLTGHKPLPFAEAPALERTPGPDLADVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEATESE
ALEAAAIASVSGRGLDPARWRERPFRSPHHTASAVALVGGGAQPRPGEISLAHQGVLFLDELPEWDRRALEVLREPLESG
VITVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSPDAIRRYRGRVSGPLLDRIDLHVEVARLPPAALRPDAPA
GESTQTVRARIVEARARQHARSGKTNAVLDQPETASACRLADADRLLLERAVDALQLSARSMHRIMRVARTIADLDGAEV
IGTAHLTEAISLRRATRGLEAAVA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=99240 LA521A_RS18290 WP_281780253.1 4016116..4017630(+) (comM) [Lysobacter auxotrophicus strain 5-21a]
ATGAACCTGGCACTCGTGCACAGCCGTGCACGATCGGGCGTCCGTGCGCCCGCGGTACGCGTCGAAGTCCATCTGGCTGG
TGGCTTGCCCGCGATGTCGATCGTCGGCTTGCCCGAGGCCGCAGTGCGCGAAGCCAAGGACCGGGTACGCGCGGCGATCC
TCTGCGCACAGTTCGAATTCCCGGCGCGGCGCATCACGATCAACCTCGCACCGGCCGACCTGCCCAAGGACGGGGGCCGG
TTCGACCTGCCGATCGCCCTCGGCATCCTCGCCGCGAGCGGGCAGATCCCGCTGGAAGCGCTCGGCGATGGCGAGTTCCT
CGGGGAGCTCGGCCTCACCGGCGAACTGCGCGCGGTGGATGGCGTGCTCCCGGCGGCACTCGCGGCCGGTGACGCGGGAC
GCCGCCTCATCGTGCCGGCAGGCAACGGCGCCGAGGCGGCGCTCGCCAGCCGCGTCGAAGTGCGCACGGCCCGCACGCTG
CTGGAAGTCTGCGCGCACCTCACCGGCCACAAGCCGCTACCGTTCGCCGAAGCGCCGGCGCTGGAACGCACGCCCGGGCC
GGACCTTGCCGACGTCCGCGGTCAGGCGCAGGCGCGTCGGGCCCTGGAAATCGCCGCGGCCGGAGGGCACCACCTGTTGC
TGATCGGCCCGCCGGGCTGCGGCAAGACGCTGCTGGCTTCGCGCCTCCCGGGCCTGTTGCCGGAGGCGACCGAAAGCGAG
GCATTGGAGGCGGCGGCCATCGCCTCGGTGAGTGGGCGCGGGCTCGATCCCGCCCGCTGGCGCGAGCGCCCCTTCCGCTC
GCCGCACCACACCGCAAGCGCGGTGGCGCTGGTCGGCGGCGGTGCGCAGCCGCGGCCCGGCGAGATCTCGCTCGCGCATC
AGGGCGTGCTGTTCCTCGACGAGCTTCCCGAGTGGGATCGCCGCGCACTCGAAGTCCTGCGCGAGCCTTTGGAATCGGGC
GTCATCACCGTCTCGCGCGCGGCGCGCAGCGCGGAGTTTCCCGCCCGGTTCCAGCTGGTCGCGGCGATGAACCCGTGCCC
CTGCGGCTGGGCCGGCGATCCGTCGGGCCGTTGCCGGTGCAGTCCCGACGCGATACGACGCTATCGCGGCCGCGTGTCCG
GGCCGCTGCTCGATCGCATCGACCTGCACGTCGAAGTCGCGCGCCTGCCGCCCGCTGCGCTGCGTCCCGATGCACCGGCC
GGCGAATCCACGCAGACGGTGCGCGCACGCATCGTCGAGGCACGCGCGCGCCAGCATGCTCGATCGGGAAAGACGAACGC
CGTGCTCGACCAGCCGGAAACCGCATCGGCTTGCCGGCTCGCCGACGCCGACCGCCTGCTGCTCGAACGTGCGGTCGATG
CCCTGCAGCTGTCGGCGCGGTCGATGCACCGGATCATGCGCGTGGCGCGCACCATCGCCGACCTCGACGGCGCCGAGGTC
ATCGGCACCGCGCACCTGACCGAAGCCATTTCGTTGCGACGCGCCACGCGCGGCCTCGAAGCCGCGGTGGCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.98

99.603

0.548
  comM Vibrio campbellii strain DS40M4

54.15

100

0.544
  comM Glaesserella parasuis strain SC1401

53.846

100

0.542
  comM Haemophilus influenzae Rd KW20

52.86

100

0.532
  comM Legionella pneumophila str. Paris

50.402

98.81

0.498
  comM Legionella pneumophila strain ERS1305867

50.402

98.81

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.442

Multiple sequence alignment