Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHV35_RS25840 Genome accession   NZ_CP153962
Coordinates   5309096..5310616 (+) Length   506 a.a.
NCBI ID   WP_064160931.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain KP_NORM_BLD_62512     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5304096..5315616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHV35_RS25815 (AAHV35_25790) - 5305653..5306582 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHV35_RS25820 (AAHV35_25795) ilvM 5306602..5306859 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  AAHV35_RS25825 (AAHV35_25800) ilvG 5306856..5308502 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHV35_RS25830 ilvX 5308505..5308558 (-) 54 WP_201281575.1 peptide IlvX -
  AAHV35_RS25835 (AAHV35_25805) ilvL 5308643..5308741 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHV35_RS25840 (AAHV35_25810) comM 5309096..5310616 (+) 1521 WP_064160931.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHV35_RS25845 (AAHV35_25815) - 5310641..5310979 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHV35_RS25850 (AAHV35_25820) hdfR 5311098..5311919 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55115.59 Da        Isoelectric Point: 8.2651

>NTDB_id=992346 AAHV35_RS25840 WP_064160931.1 5309096..5310616(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_62512]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPLPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=992346 AAHV35_RS25840 WP_064160931.1 5309096..5310616(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_62512]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCAGAGACTACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCTTTGA
TTAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCTGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCTGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCTGAGGTGGGACTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTTTCGCCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGCTG
CGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAACCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTAGGCGGAGGCTCAATACCTGTCCCCGGCGAGATTTCACTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCAGAGTTTGAACGACGGGTGCTGGACGCGCTGCGTGAACCCATTGAGTCA
GGCAAGATCCACATATCACGATCGCGCGCCAAGATTGACTATCCGGCGCGTTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCTACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGGCGCCTGTCCGGCC
CTTTTCTCGACCGCTTCGATCTTTCTTTAGAGATCCCGCTCCCGCTGCCGGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAATCGAGTGCGACGGTCCGTCAGCGTGTGCTGGCGGCACGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGGCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAGC
TGGGGCTTTCTATACGGGCCTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.687

100

0.603
  comM Glaesserella parasuis strain SC1401

59.57

100

0.603
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449

Multiple sequence alignment