Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHU45_RS25955 Genome accession   NZ_CP153805
Coordinates   5320200..5321720 (+) Length   506 a.a.
NCBI ID   WP_373626801.1    Uniprot ID   -
Organism   Klebsiella variicola subsp. variicola strain KP_NORM_BLD_114453     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5315200..5326720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHU45_RS25930 (AAHU45_25890) - 5316757..5317686 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  AAHU45_RS25935 (AAHU45_25895) ilvM 5317706..5317963 (-) 258 WP_008807981.1 acetolactate synthase 2 small subunit -
  AAHU45_RS25940 (AAHU45_25900) ilvG 5317960..5319606 (-) 1647 WP_008807982.1 acetolactate synthase 2 catalytic subunit -
  AAHU45_RS25945 ilvX 5319609..5319662 (-) 54 WP_201281575.1 peptide IlvX -
  AAHU45_RS25950 (AAHU45_25905) ilvL 5319747..5319845 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHU45_RS25955 (AAHU45_25910) comM 5320200..5321720 (+) 1521 WP_373626801.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHU45_RS25960 (AAHU45_25915) - 5321745..5322083 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHU45_RS25965 (AAHU45_25920) hdfR 5322202..5323023 (+) 822 WP_012543255.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55147.59 Da        Isoelectric Point: 8.2651

>NTDB_id=992206 AAHU45_RS25955 WP_373626801.1 5320200..5321720(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_114453]
MSLAIVYTRAALGIEAPLITIEVHLSSGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVFSSDNAAEVGLIGGSDCLVADHL
QQVCAFLAGQASLSPPLADVPAVDERCEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLACRLPGLLPPLSNQ
EALESTAIQSLVNLQTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRQEDALWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=992206 AAHU45_RS25955 WP_373626801.1 5320200..5321720(+) (comM) [Klebsiella variicola subsp. variicola strain KP_NORM_BLD_114453]
ATGTCGCTCGCCATCGTTTACACACGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTATCGAGGTTCATCTCAGCAG
CGGTCTGCCTGGCTTGACCATGGTCGGGCTACCGGAGACCACCGTGAAAGAGGCCCGCGACCGGGTACGCAGCGCCTTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCACCCGCGGATCTGCCCAAAGAGGGCGGGCGA
TATGACCTTCCCATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAACACTACCCGATTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGCGGCTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATTGTCTTCTCCTCTGACAATGCGGCTGAGGTGGGTCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAACAGGTGTGCGCGTTTCTCGCAGGGCAAGCATCGCTCTCGCCGCCTCTCGCCGACGTGCCCGCCGTTGATGAACGCTG
TGAAGATCTACGTGATGTTATCGGCCAACAACAAGGCAAGCGAGCGCTGGAGATTGTGGCGGCCGGTGGCCACAACCTGC
TGCTGATTGGCCCGCCCGGTACCGGCAAAACAATGCTTGCCTGCCGGCTCCCCGGCCTTTTGCCGCCATTAAGCAACCAG
GAAGCGCTGGAGAGCACGGCCATTCAAAGTCTGGTCAACCTCCAGACTGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCCCCTCACCATAGCGCCTCGCTGGCAGCGATGGTAGGTGGAGGCTCAATACCTGTCCCCGGCGAGATTTCACTGGCCC
ATAATGGCGTCCTATTTCTTGATGAACTGCCAGAGTTTGAACGACGGGTGCTGGACGCGCTGCGTGAACCCATTGAGTCA
GGCAAGATCCACATATCACGATCGCGCGCCAAGATTGACTATCCGGCGCGTTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCTACCGGGCATTATCAGGGCAAACATAATCGCGCGTCGCCTGAGCAGACATTGCGCTACCTTGGGCGCCTGTCCGGCC
CTTTTCTCGACCGCTTCGATCTTTCTTTAGAGATCCCGCTCCCGCCGCCGGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAATCGAGTGCGACGGTCCGTCAGCGTGTGCTGGCGGCACGTGAACGTCAAATGCTCAGGCAAAATAAGCTGAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGTCACTTGCGCCAGGAGGATGCGCTTTGGCTGGAACAGACGTTAACGCAAC
TGGGGCTTTCTATACGGGCTTGGCAGCGTCTGTTAAAGGTGGCAAGAACCATTGCCGATCTGGCAGAAGCTGAAGAGATT
GAACGCCGCCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.883

100

0.605
  comM Glaesserella parasuis strain SC1401

59.57

100

0.603
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.449

Multiple sequence alignment