Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHY93_RS25210 Genome accession   NZ_CP153681
Coordinates   5127124..5128644 (+) Length   506 a.a.
NCBI ID   WP_373855723.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain Kpn5836     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5122124..5133644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHY93_RS25185 (AAHY93_25125) ilvE 5123684..5124613 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  AAHY93_RS25190 (AAHY93_25130) ilvM 5124630..5124887 (-) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  AAHY93_RS25195 (AAHY93_25135) ilvG 5124884..5126530 (-) 1647 WP_373855722.1 acetolactate synthase 2 catalytic subunit -
  AAHY93_RS25200 ilvX 5126533..5126586 (-) 54 WP_201281575.1 peptide IlvX -
  AAHY93_RS25205 (AAHY93_25140) ilvL 5126671..5126769 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHY93_RS25210 (AAHY93_25145) comM 5127124..5128644 (+) 1521 WP_373855723.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHY93_RS25215 (AAHY93_25150) - 5128670..5129008 (-) 339 WP_004146520.1 DUF413 domain-containing protein -
  AAHY93_RS25220 (AAHY93_25155) hdfR 5129127..5129948 (+) 822 WP_021312961.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55186.65 Da        Isoelectric Point: 8.8449

>NTDB_id=991660 AAHY93_RS25210 WP_373855723.1 5127124..5128644(+) (comM) [Klebsiella pneumoniae strain Kpn5836]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVKEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=991660 AAHY93_RS25210 WP_373855723.1 5127124..5128644(+) (comM) [Klebsiella pneumoniae strain Kpn5836]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAACCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCACCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCTGTCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTAAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATTGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.078

100

0.607
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.402

98.419

0.496
  comM Legionella pneumophila strain ERS1305867

50.402

98.419

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.447

Multiple sequence alignment