Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SP4011_RS11240 Genome accession   NZ_AP026968
Coordinates   2294128..2294790 (-) Length   220 a.a.
NCBI ID   WP_262081990.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2289128..2299790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS11215 (SP4011_21690) - 2289278..2289544 (-) 267 WP_000128619.1 Veg family protein -
  SP4011_RS11220 (SP4011_21700) dnaB 2289546..2290898 (-) 1353 WP_050142692.1 replicative DNA helicase -
  SP4011_RS11225 (SP4011_21710) rplI 2290942..2291394 (-) 453 WP_000864214.1 50S ribosomal protein L9 -
  SP4011_RS11230 (SP4011_21720) - 2291391..2293364 (-) 1974 WP_338619354.1 DHH family phosphoesterase -
  SP4011_RS11235 (SP4011_21730) hpf 2293500..2294048 (-) 549 WP_050142688.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SP4011_RS11240 (SP4011_21740) comFC/cflB 2294128..2294790 (-) 663 WP_262081990.1 ComF family protein Machinery gene
  SP4011_RS11245 (SP4011_21750) comFA/cflA 2294787..2296085 (-) 1299 WP_338619355.1 DEAD/DEAH box helicase Machinery gene
  SP4011_RS11250 (SP4011_21760) - 2296142..2296777 (+) 636 WP_338619356.1 YigZ family protein -
  SP4011_RS11255 (SP4011_21770) cysK 2297062..2297988 (+) 927 WP_338619357.1 cysteine synthase A -
  SP4011_RS11260 (SP4011_21780) tsf 2298110..2299150 (-) 1041 WP_173234333.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25158.05 Da        Isoelectric Point: 7.7117

>NTDB_id=99148 SP4011_RS11240 WP_262081990.1 2294128..2294790(-) (comFC/cflB) [Streptococcus parapneumoniae strain SP4011]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDFTFERIGEENCPNCMKTGLSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKIFASFLSAELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLGKREERASSS
KNRSERLATELPFFIKSGVTIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=99148 SP4011_RS11240 WP_262081990.1 2294128..2294790(-) (comFC/cflB) [Streptococcus parapneumoniae strain SP4011]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTGCTTCTGAGGAATGATGACTC
CTGTCTTTGTTCAGACTGTGATTTTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGGTTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTATAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGATTTCCTTTTAAGAAAAATTTTCGCTTCATTTTTAAGTGC
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTAGTCATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTACTAGGAAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGCGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAGAAAATCCTACT
TATAGATGATATTTATACTACAGGAACAACTATAAATCGTGTGAAGAAACTGCTGGAAGAAGCTGGTGCTGAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(159-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

96.364

100

0.964
  comFC/cflB Streptococcus pneumoniae Rx1

95.909

100

0.959
  comFC/cflB Streptococcus pneumoniae D39

95.909

100

0.959
  comFC/cflB Streptococcus pneumoniae R6

95.909

100

0.959
  comFC/cflB Streptococcus mitis NCTC 12261

90.909

100

0.909
  comFC/cflB Streptococcus mitis SK321

89.545

100

0.895

Multiple sequence alignment